Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SNRNP40Q96DI7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 AL049597.2-201ENST00000565575 961 ntBASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 AC124283.5-201ENST00000624661 1809 ntBASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SNRNP40Q96DI7 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 AC145285.6-201ENST00000604632 637 ntBASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 AC073195.1-201ENST00000607241 877 ntBASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 MIR6786-201ENST00000616843 113 ntBASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 AC092865.7-201ENST00000641832 219 ntBASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.24■□□□□ 0.51
SNRNP40Q96DI7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 AC023632.3-201ENST00000521633 145 ntBASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 AC005363.2-201ENST00000618631 242 ntBASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 AL590326.2-201ENST00000625139 305 ntBASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SNRNP40Q96DI7 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SNRNP40Q96DI7 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SNRNP40Q96DI7 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.21■□□□□ 0.51
SNRNP40Q96DI7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SNRNP40Q96DI7 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms