Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
CCDC40Q4G0X9 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 ANKRD20A6P-201ENST00000618763 204 ntBASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC40Q4G0X9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 AC007322.4-201ENST00000509611 723 ntBASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 AC016405.3-201ENST00000607710 860 ntBASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC40Q4G0X9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
CCDC40Q4G0X9 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
CCDC40Q4G0X9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
CCDC40Q4G0X9 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
CCDC40Q4G0X9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 ME2-218ENST00000640965 2476 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 PGM5P4-201ENST00000421970 445 ntBASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 MIR5787-201ENST00000611784 55 ntBASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 DPP3P2-201ENST00000416030 1696 ntBASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC40Q4G0X9 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 AL162430.1-201ENST00000480705 870 ntBASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.19■■□□□ 1.14
CCDC40Q4G0X9 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms