Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC14.6□□□□□ -0.07
COL7A1Q02388 AC080038.3-201ENST00000623346 1952 ntBASIC14.6□□□□□ -0.07
COL7A1Q02388 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC14.6□□□□□ -0.07
COL7A1Q02388 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL7A1Q02388 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL7A1Q02388 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL7A1Q02388 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL7A1Q02388 STX5-203ENST00000394690 1568 ntTSL 5 BASIC14.6□□□□□ -0.07
COL7A1Q02388 MESTP1-201ENST00000404287 994 ntBASIC14.6□□□□□ -0.07
COL7A1Q02388 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL7A1Q02388 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
COL7A1Q02388 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
COL7A1Q02388 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL7A1Q02388 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC14.6□□□□□ -0.07
COL7A1Q02388 C1orf229-201ENST00000623686 2258 ntBASIC14.59□□□□□ -0.07
COL7A1Q02388 INGX-201ENST00000359239 846 ntBASIC14.59□□□□□ -0.07
COL7A1Q02388 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC14.59□□□□□ -0.07
COL7A1Q02388 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC14.59□□□□□ -0.07
COL7A1Q02388 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL7A1Q02388 KSR1P1-201ENST00000446298 240 ntBASIC14.59□□□□□ -0.07
COL7A1Q02388 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC14.59□□□□□ -0.07
COL7A1Q02388 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.59□□□□□ -0.07
COL7A1Q02388 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL7A1Q02388 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC14.59□□□□□ -0.07
COL7A1Q02388 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL7A1Q02388 TSPY14P-201ENST00000303979 915 ntBASIC14.59□□□□□ -0.07
COL7A1Q02388 BET1L-202ENST00000332865 533 ntTSL 5 BASIC14.59□□□□□ -0.07
COL7A1Q02388 AC004264.1-201ENST00000608354 794 ntBASIC14.59□□□□□ -0.07
COL7A1Q02388 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
COL7A1Q02388 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
COL7A1Q02388 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL7A1Q02388 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC14.59□□□□□ -0.07
COL7A1Q02388 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC14.59□□□□□ -0.07
COL7A1Q02388 CLN6-204ENST00000564752 900 ntTSL 3 BASIC14.59□□□□□ -0.07
COL7A1Q02388 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
COL7A1Q02388 AC116407.4-201ENST00000623319 1061 ntBASIC14.59□□□□□ -0.07
COL7A1Q02388 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
COL7A1Q02388 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC14.58□□□□□ -0.07
COL7A1Q02388 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL7A1Q02388 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL7A1Q02388 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL7A1Q02388 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
COL7A1Q02388 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC14.58□□□□□ -0.08
COL7A1Q02388 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
COL7A1Q02388 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.58□□□□□ -0.08
COL7A1Q02388 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC14.58□□□□□ -0.08
COL7A1Q02388 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
COL7A1Q02388 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC14.58□□□□□ -0.08
COL7A1Q02388 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
COL7A1Q02388 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 NIFKP9-201ENST00000419265 221 ntBASIC14.58□□□□□ -0.08
COL7A1Q02388 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL7A1Q02388 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC14.58□□□□□ -0.08
COL7A1Q02388 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC14.58□□□□□ -0.08
COL7A1Q02388 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC14.58□□□□□ -0.08
COL7A1Q02388 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC14.58□□□□□ -0.08
COL7A1Q02388 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
COL7A1Q02388 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC14.57□□□□□ -0.08
COL7A1Q02388 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC14.57□□□□□ -0.08
COL7A1Q02388 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC14.57□□□□□ -0.08
COL7A1Q02388 SAPCD2P2-201ENST00000431719 1174 ntBASIC14.57□□□□□ -0.08
COL7A1Q02388 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC14.57□□□□□ -0.08
COL7A1Q02388 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC14.57□□□□□ -0.08
COL7A1Q02388 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
COL7A1Q02388 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC14.57□□□□□ -0.08
COL7A1Q02388 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC14.57□□□□□ -0.08
COL7A1Q02388 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms