Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIM2P55344 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIM2P55344 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIM2P55344 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIM2P55344 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.2■□□□□ 0.66
LIM2P55344 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIM2P55344 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.2■□□□□ 0.66
LIM2P55344 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.2■□□□□ 0.66
LIM2P55344 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.2■□□□□ 0.66
LIM2P55344 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LIM2P55344 HLA-L-209ENST00000420110 1011 ntBASIC19.2■□□□□ 0.66
LIM2P55344 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.2■□□□□ 0.66
LIM2P55344 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.2■□□□□ 0.66
LIM2P55344 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIM2P55344 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LIM2P55344 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIM2P55344 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIM2P55344 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIM2P55344 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIM2P55344 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LIM2P55344 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LIM2P55344 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.2■□□□□ 0.66
LIM2P55344 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.19■□□□□ 0.66
LIM2P55344 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
LIM2P55344 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.19■□□□□ 0.66
LIM2P55344 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
LIM2P55344 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.19■□□□□ 0.66
LIM2P55344 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
LIM2P55344 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.19■□□□□ 0.66
LIM2P55344 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.19■□□□□ 0.66
LIM2P55344 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.19■□□□□ 0.66
LIM2P55344 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.19■□□□□ 0.66
LIM2P55344 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
LIM2P55344 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.19■□□□□ 0.66
LIM2P55344 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIM2P55344 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 AC092720.2-201ENST00000602388 1665 ntBASIC19.18■□□□□ 0.66
LIM2P55344 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LIM2P55344 ID1-201ENST00000376105 1233 ntBASIC19.18■□□□□ 0.66
LIM2P55344 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.18■□□□□ 0.66
LIM2P55344 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.18■□□□□ 0.66
LIM2P55344 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
LIM2P55344 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.18■□□□□ 0.66
LIM2P55344 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LIM2P55344 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.18■□□□□ 0.66
LIM2P55344 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.18■□□□□ 0.66
LIM2P55344 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.18■□□□□ 0.66
LIM2P55344 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIM2P55344 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
LIM2P55344 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.17■□□□□ 0.66
LIM2P55344 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.17■□□□□ 0.66
LIM2P55344 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
LIM2P55344 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
LIM2P55344 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
LIM2P55344 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 AL391422.3-201ENST00000603791 2761 ntBASIC19.17■□□□□ 0.66
LIM2P55344 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.17■□□□□ 0.66
LIM2P55344 AC020907.5-201ENST00000624372 1936 ntBASIC19.17■□□□□ 0.66
LIM2P55344 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.17■□□□□ 0.66
LIM2P55344 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIM2P55344 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIM2P55344 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.16■□□□□ 0.66
LIM2P55344 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
LIM2P55344 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIM2P55344 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIM2P55344 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms