Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
VCPP55072 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VCPP55072 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VCPP55072 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VCPP55072 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VCPP55072 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.62■■□□□ 1.05
VCPP55072 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VCPP55072 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VCPP55072 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.62■■□□□ 1.05
VCPP55072 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VCPP55072 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.62■■□□□ 1.05
VCPP55072 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
VCPP55072 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.62■■□□□ 1.05
VCPP55072 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
VCPP55072 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VCPP55072 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
VCPP55072 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
VCPP55072 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
VCPP55072 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VCPP55072 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.61■■□□□ 1.05
VCPP55072 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.61■■□□□ 1.05
VCPP55072 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.61■■□□□ 1.05
VCPP55072 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VCPP55072 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.61■■□□□ 1.05
VCPP55072 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.61■■□□□ 1.05
VCPP55072 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
VCPP55072 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.6■■□□□ 1.05
VCPP55072 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
VCPP55072 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.6■■□□□ 1.05
VCPP55072 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.6■■□□□ 1.05
VCPP55072 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
VCPP55072 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.6■■□□□ 1.05
VCPP55072 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 AL445228.2-201ENST00000605589 952 ntBASIC21.6■■□□□ 1.05
VCPP55072 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
VCPP55072 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
VCPP55072 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCPP55072 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
VCPP55072 AC006128.1-201ENST00000624704 1661 ntBASIC21.6■■□□□ 1.05
VCPP55072 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VCPP55072 FEM1AP1-201ENST00000431297 1995 ntBASIC21.59■■□□□ 1.05
VCPP55072 PLK5-205ENST00000642079 1969 ntBASIC21.59■■□□□ 1.05
VCPP55072 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VCPP55072 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VCPP55072 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VCPP55072 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VCPP55072 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.59■■□□□ 1.05
VCPP55072 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.59■■□□□ 1.05
VCPP55072 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.59■■□□□ 1.05
VCPP55072 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.59■■□□□ 1.05
VCPP55072 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.59■■□□□ 1.05
VCPP55072 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VCPP55072 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VCPP55072 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.58■■□□□ 1.05
VCPP55072 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.58■■□□□ 1.05
VCPP55072 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VCPP55072 SLC25A24-204ENST00000569674 2357 ntBASIC21.58■■□□□ 1.05
VCPP55072 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.58■■□□□ 1.05
VCPP55072 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
VCPP55072 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VCPP55072 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.58■■□□□ 1.05
VCPP55072 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.58■■□□□ 1.05
VCPP55072 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VCPP55072 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VCPP55072 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
VCPP55072 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.58■■□□□ 1.05
VCPP55072 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.58■■□□□ 1.05
VCPP55072 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.58■■□□□ 1.05
VCPP55072 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.58■■□□□ 1.05
VCPP55072 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.58■■□□□ 1.05
VCPP55072 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.58■■□□□ 1.05
VCPP55072 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
VCPP55072 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VCPP55072 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
VCPP55072 LINC01006-201ENST00000333319 2292 ntBASIC21.58■■□□□ 1.04
VCPP55072 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
VCPP55072 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
VCPP55072 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VCPP55072 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VCPP55072 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.57■■□□□ 1.04
VCPP55072 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
VCPP55072 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.57■■□□□ 1.04
VCPP55072 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms