Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.81■□□□□ 0.92
NEK3P51956 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.81■□□□□ 0.92
NEK3P51956 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.8■□□□□ 0.92
NEK3P51956 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.8■□□□□ 0.92
NEK3P51956 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
NEK3P51956 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.8■□□□□ 0.92
NEK3P51956 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.8■□□□□ 0.92
NEK3P51956 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.8■□□□□ 0.92
NEK3P51956 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.8■□□□□ 0.92
NEK3P51956 CD99P1-205ENST00000527459 561 ntBASIC20.8■□□□□ 0.92
NEK3P51956 KRT18P6-201ENST00000555540 1265 ntBASIC20.8■□□□□ 0.92
NEK3P51956 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
NEK3P51956 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.8■□□□□ 0.92
NEK3P51956 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 AC020907.5-201ENST00000624372 1936 ntBASIC20.8■□□□□ 0.92
NEK3P51956 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.8■□□□□ 0.92
NEK3P51956 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
NEK3P51956 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NEK3P51956 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.8■□□□□ 0.92
NEK3P51956 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NEK3P51956 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.79■□□□□ 0.92
NEK3P51956 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NEK3P51956 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
NEK3P51956 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
NEK3P51956 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NEK3P51956 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
NEK3P51956 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.79■□□□□ 0.92
NEK3P51956 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
NEK3P51956 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NEK3P51956 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NEK3P51956 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NEK3P51956 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NEK3P51956 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.79■□□□□ 0.92
NEK3P51956 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.79■□□□□ 0.92
NEK3P51956 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.79■□□□□ 0.92
NEK3P51956 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NEK3P51956 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.79■□□□□ 0.92
NEK3P51956 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
NEK3P51956 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
NEK3P51956 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 AC007225.1-201ENST00000566331 1836 ntBASIC20.78■□□□□ 0.92
NEK3P51956 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
NEK3P51956 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.78■□□□□ 0.92
NEK3P51956 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.78■□□□□ 0.92
NEK3P51956 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.78■□□□□ 0.92
NEK3P51956 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.78■□□□□ 0.92
NEK3P51956 AC100791.3-201ENST00000617619 330 ntBASIC20.78■□□□□ 0.92
NEK3P51956 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.78■□□□□ 0.92
NEK3P51956 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
NEK3P51956 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NEK3P51956 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
NEK3P51956 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 AFG3L1P-217ENST00000557444 2447 ntBASIC20.77■□□□□ 0.92
NEK3P51956 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
NEK3P51956 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
NEK3P51956 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.77■□□□□ 0.92
NEK3P51956 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.77■□□□□ 0.92
NEK3P51956 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.77■□□□□ 0.92
NEK3P51956 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.77■□□□□ 0.92
NEK3P51956 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.77■□□□□ 0.92
NEK3P51956 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.77■□□□□ 0.92
NEK3P51956 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NEK3P51956 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.77■□□□□ 0.91
NEK3P51956 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
NEK3P51956 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
NEK3P51956 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NEK3P51956 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NEK3P51956 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms