Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC33.19■■■□□ 2.9
CHD1O14646 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
CHD1O14646 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
CHD1O14646 FAM86EP-206ENST00000510506 987 ntBASIC33.19■■■□□ 2.9
CHD1O14646 EGLN1P1-201ENST00000531623 762 ntBASIC33.19■■■□□ 2.9
CHD1O14646 AC012313.10-201ENST00000623509 926 ntBASIC33.19■■■□□ 2.9
CHD1O14646 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC33.19■■■□□ 2.9
CHD1O14646 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC33.19■■■□□ 2.9
CHD1O14646 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC33.18■■■□□ 2.9
CHD1O14646 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
CHD1O14646 AC128688.1-201ENST00000487626 519 ntBASIC33.18■■■□□ 2.9
CHD1O14646 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC33.18■■■□□ 2.9
CHD1O14646 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC33.18■■■□□ 2.9
CHD1O14646 BET1L-202ENST00000332865 533 ntTSL 5 BASIC33.17■■■□□ 2.9
CHD1O14646 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC33.17■■■□□ 2.9
CHD1O14646 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC33.17■■■□□ 2.9
CHD1O14646 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC33.17■■■□□ 2.9
CHD1O14646 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC33.17■■■□□ 2.9
CHD1O14646 AC069148.1-201ENST00000608741 768 ntBASIC33.17■■■□□ 2.9
CHD1O14646 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC33.17■■■□□ 2.9
CHD1O14646 ABBA01031674.1-201ENST00000635145 728 ntBASIC33.17■■■□□ 2.9
CHD1O14646 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
CHD1O14646 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CHD1O14646 FAM207BP-201ENST00000447172 505 ntBASIC33.16■■■□□ 2.9
CHD1O14646 AC023632.3-201ENST00000521633 145 ntBASIC33.16■■■□□ 2.9
CHD1O14646 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CHD1O14646 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CHD1O14646 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CHD1O14646 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC33.16■■■□□ 2.9
CHD1O14646 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CHD1O14646 C1QL1P1-201ENST00000568105 661 ntBASIC33.16■■■□□ 2.9
CHD1O14646 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC33.16■■■□□ 2.9
CHD1O14646 AL121956.5-201ENST00000625261 221 ntBASIC33.16■■■□□ 2.9
CHD1O14646 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CHD1O14646 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CHD1O14646 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC33.16■■■□□ 2.9
CHD1O14646 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC33.15■■■□□ 2.9
CHD1O14646 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC33.15■■■□□ 2.9
CHD1O14646 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC33.15■■■□□ 2.9
CHD1O14646 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
CHD1O14646 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC33.15■■■□□ 2.9
CHD1O14646 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC33.15■■■□□ 2.9
CHD1O14646 CREM-210ENST00000374721 2020 ntTSL 5 BASIC33.14■■■□□ 2.9
CHD1O14646 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC33.14■■■□□ 2.9
CHD1O14646 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
CHD1O14646 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC33.14■■■□□ 2.9
CHD1O14646 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC33.14■■■□□ 2.9
CHD1O14646 AL031985.4-201ENST00000642138 673 ntBASIC33.14■■■□□ 2.9
CHD1O14646 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC33.14■■■□□ 2.9
CHD1O14646 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
CHD1O14646 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC33.14■■■□□ 2.9
CHD1O14646 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
CHD1O14646 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC33.14■■■□□ 2.89
CHD1O14646 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC33.14■■■□□ 2.89
CHD1O14646 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
CHD1O14646 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC33.13■■■□□ 2.89
CHD1O14646 AC005332.1-201ENST00000577698 1310 ntBASIC33.13■■■□□ 2.89
CHD1O14646 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC33.13■■■□□ 2.89
CHD1O14646 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC33.13■■■□□ 2.89
CHD1O14646 HMGA1P5-201ENST00000412453 271 ntBASIC33.13■■■□□ 2.89
CHD1O14646 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC33.13■■■□□ 2.89
CHD1O14646 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC33.13■■■□□ 2.89
CHD1O14646 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
CHD1O14646 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
CHD1O14646 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
CHD1O14646 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC33.12■■■□□ 2.89
CHD1O14646 AC246785.2-201ENST00000432512 513 ntBASIC33.12■■■□□ 2.89
CHD1O14646 PVRIG2P-201ENST00000435460 978 ntBASIC33.12■■■□□ 2.89
CHD1O14646 B3GAT3P1-201ENST00000471720 806 ntBASIC33.12■■■□□ 2.89
CHD1O14646 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC33.12■■■□□ 2.89
CHD1O14646 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC33.12■■■□□ 2.89
CHD1O14646 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
CHD1O14646 IER3-202ENST00000376377 1350 ntBASIC33.12■■■□□ 2.89
CHD1O14646 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
CHD1O14646 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
CHD1O14646 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
CHD1O14646 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC33.11■■■□□ 2.89
CHD1O14646 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
CHD1O14646 AC023511.2-201ENST00000618803 211 ntBASIC33.11■■■□□ 2.89
CHD1O14646 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC33.11■■■□□ 2.89
CHD1O14646 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
CHD1O14646 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC33.11■■■□□ 2.89
CHD1O14646 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
CHD1O14646 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
CHD1O14646 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC33.11■■■□□ 2.89
CHD1O14646 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC33.11■■■□□ 2.89
CHD1O14646 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC33.11■■■□□ 2.89
CHD1O14646 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
CHD1O14646 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
CHD1O14646 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
CHD1O14646 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
CHD1O14646 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC33.1■■■□□ 2.89
CHD1O14646 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC33.1■■■□□ 2.89
CHD1O14646 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
CHD1O14646 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC33.1■■■□□ 2.89
CHD1O14646 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC33.1■■■□□ 2.89
CHD1O14646 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
CHD1O14646 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
CHD1O14646 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC33.09■■■□□ 2.89
CHD1O14646 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC33.09■■■□□ 2.89
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms