Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 RPS2P55-201ENST00000397318 883 ntBASIC20.95■□□□□ 0.94
TDP1Q9NUW8 AC012618.2-201ENST00000428058 849 ntBASIC20.95■□□□□ 0.94
TDP1Q9NUW8 AC107956.1-201ENST00000494359 873 ntBASIC20.95■□□□□ 0.94
TDP1Q9NUW8 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.95■□□□□ 0.94
TDP1Q9NUW8 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 AC233702.5-201ENST00000584107 538 ntBASIC20.94■□□□□ 0.94
TDP1Q9NUW8 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TDP1Q9NUW8 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TDP1Q9NUW8 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 PRKY-204ENST00000533551 1019 ntBASIC20.92■□□□□ 0.94
TDP1Q9NUW8 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TDP1Q9NUW8 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms