Protein–RNA interactions for Protein: Q99732

LITAF, Lipopolysaccharide-induced tumor necrosis factor-alpha factor, humanhuman

Predictions only

Length 161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LITAFQ99732 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LITAFQ99732 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LITAFQ99732 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LITAFQ99732 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
LITAFQ99732 AC079598.2-202ENST00000546624 1451 ntBASIC13.49□□□□□ -0.25
LITAFQ99732 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
LITAFQ99732 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
LITAFQ99732 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
LITAFQ99732 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC13.49□□□□□ -0.25
LITAFQ99732 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LITAFQ99732 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC13.49□□□□□ -0.25
LITAFQ99732 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
LITAFQ99732 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
LITAFQ99732 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LITAFQ99732 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LITAFQ99732 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC13.49□□□□□ -0.25
LITAFQ99732 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC13.49□□□□□ -0.25
LITAFQ99732 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
LITAFQ99732 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC13.49□□□□□ -0.25
LITAFQ99732 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LITAFQ99732 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
LITAFQ99732 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC13.48□□□□□ -0.25
LITAFQ99732 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
LITAFQ99732 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC13.48□□□□□ -0.25
LITAFQ99732 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
LITAFQ99732 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC13.48□□□□□ -0.25
LITAFQ99732 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC13.48□□□□□ -0.25
LITAFQ99732 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC13.48□□□□□ -0.25
LITAFQ99732 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC13.48□□□□□ -0.25
LITAFQ99732 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 WAC-202ENST00000347934 2839 ntTSL 5 BASIC13.48□□□□□ -0.25
LITAFQ99732 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC13.48□□□□□ -0.25
LITAFQ99732 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 AL031848.2-201ENST00000607670 837 ntBASIC13.48□□□□□ -0.25
LITAFQ99732 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC13.48□□□□□ -0.25
LITAFQ99732 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC13.48□□□□□ -0.25
LITAFQ99732 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
LITAFQ99732 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LITAFQ99732 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
LITAFQ99732 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC13.47□□□□□ -0.25
LITAFQ99732 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC13.47□□□□□ -0.25
LITAFQ99732 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
LITAFQ99732 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 CROCCP3-202ENST00000420820 1947 ntBASIC13.47□□□□□ -0.25
LITAFQ99732 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC13.47□□□□□ -0.25
LITAFQ99732 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC13.47□□□□□ -0.25
LITAFQ99732 BX119927.1-201ENST00000636596 1552 ntBASIC13.47□□□□□ -0.25
LITAFQ99732 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC13.47□□□□□ -0.25
LITAFQ99732 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
LITAFQ99732 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 MBP-237ENST00000579129 1052 ntTSL 5 BASIC13.47□□□□□ -0.25
LITAFQ99732 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC13.47□□□□□ -0.25
LITAFQ99732 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC13.47□□□□□ -0.25
LITAFQ99732 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC13.47□□□□□ -0.25
LITAFQ99732 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC13.47□□□□□ -0.25
LITAFQ99732 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
LITAFQ99732 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC13.47□□□□□ -0.25
LITAFQ99732 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LITAFQ99732 AL032819.2-201ENST00000624543 2162 ntBASIC13.47□□□□□ -0.25
LITAFQ99732 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
LITAFQ99732 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
LITAFQ99732 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
LITAFQ99732 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LITAFQ99732 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC13.46□□□□□ -0.25
LITAFQ99732 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
LITAFQ99732 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC13.46□□□□□ -0.25
LITAFQ99732 LTB4R2-202ENST00000528054 3092 ntBASIC13.46□□□□□ -0.25
LITAFQ99732 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LITAFQ99732 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LITAFQ99732 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC13.46□□□□□ -0.25
LITAFQ99732 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LITAFQ99732 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LITAFQ99732 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LITAFQ99732 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms