Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 AC034268.1-201ENST00000441047 882 ntBASIC18.18■□□□□ 0.5
PTP4A1Q93096 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.18■□□□□ 0.5
PTP4A1Q93096 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.18■□□□□ 0.5
PTP4A1Q93096 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.18■□□□□ 0.5
PTP4A1Q93096 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.18■□□□□ 0.5
PTP4A1Q93096 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
PTP4A1Q93096 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.18■□□□□ 0.5
PTP4A1Q93096 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTP4A1Q93096 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.18■□□□□ 0.5
PTP4A1Q93096 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.17■□□□□ 0.5
PTP4A1Q93096 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.17■□□□□ 0.5
PTP4A1Q93096 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTP4A1Q93096 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
PTP4A1Q93096 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTP4A1Q93096 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTP4A1Q93096 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTP4A1Q93096 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.17■□□□□ 0.5
PTP4A1Q93096 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTP4A1Q93096 AC091799.1-201ENST00000422823 811 ntBASIC18.17■□□□□ 0.5
PTP4A1Q93096 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.17■□□□□ 0.5
PTP4A1Q93096 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTP4A1Q93096 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.17■□□□□ 0.5
PTP4A1Q93096 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTP4A1Q93096 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTP4A1Q93096 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTP4A1Q93096 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.17■□□□□ 0.5
PTP4A1Q93096 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.17■□□□□ 0.5
PTP4A1Q93096 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PTP4A1Q93096 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTP4A1Q93096 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTP4A1Q93096 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTP4A1Q93096 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTP4A1Q93096 KRT8P36-201ENST00000489121 1440 ntBASIC18.16■□□□□ 0.5
PTP4A1Q93096 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTP4A1Q93096 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 KRT18P20-201ENST00000548986 1279 ntBASIC18.16■□□□□ 0.5
PTP4A1Q93096 RARRES2P6-201ENST00000567333 442 ntBASIC18.16■□□□□ 0.5
PTP4A1Q93096 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTP4A1Q93096 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.16■□□□□ 0.5
PTP4A1Q93096 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTP4A1Q93096 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTP4A1Q93096 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTP4A1Q93096 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.15■□□□□ 0.5
PTP4A1Q93096 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTP4A1Q93096 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTP4A1Q93096 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
PTP4A1Q93096 AC026271.2-201ENST00000428091 497 ntBASIC18.15■□□□□ 0.5
PTP4A1Q93096 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTP4A1Q93096 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.15■□□□□ 0.5
PTP4A1Q93096 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.15■□□□□ 0.5
PTP4A1Q93096 AC087623.3-201ENST00000607047 1098 ntBASIC18.15■□□□□ 0.5
PTP4A1Q93096 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PTP4A1Q93096 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.15■□□□□ 0.5
PTP4A1Q93096 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PTP4A1Q93096 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.15■□□□□ 0.5
PTP4A1Q93096 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.15■□□□□ 0.5
PTP4A1Q93096 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTP4A1Q93096 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTP4A1Q93096 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTP4A1Q93096 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTP4A1Q93096 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PTP4A1Q93096 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.5
PTP4A1Q93096 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
PTP4A1Q93096 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
PTP4A1Q93096 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTP4A1Q93096 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTP4A1Q93096 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTP4A1Q93096 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTP4A1Q93096 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTP4A1Q93096 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.14■□□□□ 0.49
PTP4A1Q93096 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms