Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF139Q8WU17 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF139Q8WU17 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.28■■□□□ 1
RNF139Q8WU17 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.28■■□□□ 1
RNF139Q8WU17 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF139Q8WU17 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.27■■□□□ 1
RNF139Q8WU17 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.27■■□□□ 1
RNF139Q8WU17 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF139Q8WU17 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.27■■□□□ 1
RNF139Q8WU17 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
RNF139Q8WU17 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF139Q8WU17 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.27■■□□□ 1
RNF139Q8WU17 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.27■■□□□ 1
RNF139Q8WU17 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF139Q8WU17 KRT18P6-201ENST00000555540 1265 ntBASIC21.27■■□□□ 1
RNF139Q8WU17 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF139Q8WU17 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.27■■□□□ 1
RNF139Q8WU17 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF139Q8WU17 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF139Q8WU17 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RNF139Q8WU17 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RNF139Q8WU17 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.26■□□□□ 0.99
RNF139Q8WU17 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.26■□□□□ 0.99
RNF139Q8WU17 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RNF139Q8WU17 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.26■□□□□ 0.99
RNF139Q8WU17 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.26■□□□□ 0.99
RNF139Q8WU17 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.26■□□□□ 0.99
RNF139Q8WU17 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.26■□□□□ 0.99
RNF139Q8WU17 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.26■□□□□ 0.99
RNF139Q8WU17 AC007225.1-201ENST00000566331 1836 ntBASIC21.26■□□□□ 0.99
RNF139Q8WU17 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNF139Q8WU17 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF139Q8WU17 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF139Q8WU17 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF139Q8WU17 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF139Q8WU17 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF139Q8WU17 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.25■□□□□ 0.99
RNF139Q8WU17 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.25■□□□□ 0.99
RNF139Q8WU17 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RNF139Q8WU17 AC083880.1-201ENST00000608266 535 ntBASIC21.25■□□□□ 0.99
RNF139Q8WU17 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.25■□□□□ 0.99
RNF139Q8WU17 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
RNF139Q8WU17 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.25■□□□□ 0.99
RNF139Q8WU17 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF139Q8WU17 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RNF139Q8WU17 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
RNF139Q8WU17 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNF139Q8WU17 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RNF139Q8WU17 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF139Q8WU17 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
RNF139Q8WU17 FP700111.2-201ENST00000619190 1892 ntBASIC21.24■□□□□ 0.99
RNF139Q8WU17 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
RNF139Q8WU17 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF139Q8WU17 KRT8P36-201ENST00000489121 1440 ntBASIC21.24■□□□□ 0.99
RNF139Q8WU17 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF139Q8WU17 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF139Q8WU17 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.24■□□□□ 0.99
RNF139Q8WU17 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
RNF139Q8WU17 CD99P1-205ENST00000527459 561 ntBASIC21.24■□□□□ 0.99
RNF139Q8WU17 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RNF139Q8WU17 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RNF139Q8WU17 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF139Q8WU17 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF139Q8WU17 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
RNF139Q8WU17 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF139Q8WU17 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RNF139Q8WU17 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
RNF139Q8WU17 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF139Q8WU17 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF139Q8WU17 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF139Q8WU17 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
RNF139Q8WU17 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
RNF139Q8WU17 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
RNF139Q8WU17 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.23■□□□□ 0.99
RNF139Q8WU17 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF139Q8WU17 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF139Q8WU17 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF139Q8WU17 C2orf69P4-201ENST00000565394 541 ntBASIC21.23■□□□□ 0.99
RNF139Q8WU17 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF139Q8WU17 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.23■□□□□ 0.99
RNF139Q8WU17 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF139Q8WU17 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF139Q8WU17 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RNF139Q8WU17 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF139Q8WU17 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF139Q8WU17 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms