Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 AC243732.1-201ENST00000612648 864 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 AC073912.3-201ENST00000624414 853 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 CRK-204ENST00000574295 1391 ntTSL 5 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 GAS7-202ENST00000396115 929 ntTSL 5 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 AC233263.1-201ENST00000578059 224 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 AC142381.4-202ENST00000563973 229 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 FAM21FP-204ENST00000608637 956 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 AF106564.1-201ENST00000607058 2553 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 MIR718-201ENST00000390190 70 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 AC012676.1-201ENST00000574705 1949 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 POM121L13P-201ENST00000422362 380 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 SAPCD2P1-201ENST00000395413 1184 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 IRX5-204ENST00000560154 879 ntTSL 5 BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 REXO2-216ENST00000544196 452 ntTSL 3 BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
SYNE1Q8NF91 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms