Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF43Q68DV7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF43Q68DV7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.21■□□□□ 0.99
RNF43Q68DV7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.21■□□□□ 0.99
RNF43Q68DV7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF43Q68DV7 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF43Q68DV7 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF43Q68DV7 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.21■□□□□ 0.99
RNF43Q68DV7 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.21■□□□□ 0.99
RNF43Q68DV7 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF43Q68DV7 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.2■□□□□ 0.98
RNF43Q68DV7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.2■□□□□ 0.98
RNF43Q68DV7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
RNF43Q68DV7 GCSHP5-201ENST00000443090 522 ntBASIC21.2■□□□□ 0.98
RNF43Q68DV7 CYP2T3P-201ENST00000601990 817 ntBASIC21.2■□□□□ 0.98
RNF43Q68DV7 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
RNF43Q68DV7 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
RNF43Q68DV7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF43Q68DV7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RNF43Q68DV7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF43Q68DV7 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 AC116050.2-201ENST00000612102 1779 ntBASIC21.19■□□□□ 0.98
RNF43Q68DV7 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF43Q68DV7 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF43Q68DV7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF43Q68DV7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 AC083880.1-201ENST00000608266 535 ntBASIC21.19■□□□□ 0.98
RNF43Q68DV7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF43Q68DV7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF43Q68DV7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF43Q68DV7 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
RNF43Q68DV7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF43Q68DV7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF43Q68DV7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF43Q68DV7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF43Q68DV7 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
RNF43Q68DV7 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.18■□□□□ 0.98
RNF43Q68DV7 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
RNF43Q68DV7 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF43Q68DV7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RNF43Q68DV7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.18■□□□□ 0.98
RNF43Q68DV7 MCRIP2P1-201ENST00000394346 511 ntBASIC21.18■□□□□ 0.98
RNF43Q68DV7 AC091874.3-201ENST00000512672 1195 ntBASIC21.18■□□□□ 0.98
RNF43Q68DV7 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.18■□□□□ 0.98
RNF43Q68DV7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF43Q68DV7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF43Q68DV7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF43Q68DV7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.18■□□□□ 0.98
RNF43Q68DV7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF43Q68DV7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 AL596275.1-201ENST00000423464 877 ntBASIC21.17■□□□□ 0.98
RNF43Q68DV7 AL158047.1-201ENST00000445918 881 ntBASIC21.17■□□□□ 0.98
RNF43Q68DV7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.17■□□□□ 0.98
RNF43Q68DV7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF43Q68DV7 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNF43Q68DV7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.16■□□□□ 0.98
RNF43Q68DV7 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms