Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13DQ5THJ4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.21
VPS13DQ5THJ4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13DQ5THJ4 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 AC023632.3-201ENST00000521633 145 ntBASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 RPS15-203ENST00000586096 570 ntTSL 2 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 FITM1-202ENST00000559294 800 ntBASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13DQ5THJ4 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 AC110285.5-201ENST00000611501 352 ntBASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13DQ5THJ4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 MMP23A-201ENST00000234610 1017 ntBASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 AC116562.2-201ENST00000507042 360 ntBASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13DQ5THJ4 MFF-203ENST00000349901 1716 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13DQ5THJ4 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
VPS13DQ5THJ4 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13DQ5THJ4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13DQ5THJ4 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13DQ5THJ4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms