Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC28.32■■■□□ 2.12
MSH6P52701 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC28.32■■■□□ 2.12
MSH6P52701 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC28.32■■■□□ 2.12
MSH6P52701 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
MSH6P52701 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
MSH6P52701 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
MSH6P52701 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
MSH6P52701 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
MSH6P52701 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC28.31■■■□□ 2.12
MSH6P52701 GUK1-204ENST00000366721 689 ntTSL 3 BASIC28.31■■■□□ 2.12
MSH6P52701 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC28.31■■■□□ 2.12
MSH6P52701 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC28.31■■■□□ 2.12
MSH6P52701 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC28.31■■■□□ 2.12
MSH6P52701 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC28.31■■■□□ 2.12
MSH6P52701 KRT126P-201ENST00000549467 1181 ntBASIC28.31■■■□□ 2.12
MSH6P52701 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC28.31■■■□□ 2.12
MSH6P52701 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
MSH6P52701 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
MSH6P52701 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
MSH6P52701 CASK-201ENST00000378154 2494 ntTSL 5 BASIC28.31■■■□□ 2.12
MSH6P52701 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
MSH6P52701 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC28.3■■■□□ 2.12
MSH6P52701 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
MSH6P52701 ATP5G1P1-201ENST00000448724 379 ntBASIC28.3■■■□□ 2.12
MSH6P52701 AC022616.7-201ENST00000525383 220 ntBASIC28.3■■■□□ 2.12
MSH6P52701 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC28.3■■■□□ 2.12
MSH6P52701 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC28.3■■■□□ 2.12
MSH6P52701 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC28.3■■■□□ 2.12
MSH6P52701 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
MSH6P52701 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC28.29■■■□□ 2.12
MSH6P52701 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
MSH6P52701 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
MSH6P52701 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
MSH6P52701 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
MSH6P52701 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC28.29■■■□□ 2.12
MSH6P52701 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC28.29■■■□□ 2.12
MSH6P52701 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
MSH6P52701 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
MSH6P52701 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
MSH6P52701 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC28.29■■■□□ 2.12
MSH6P52701 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
MSH6P52701 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
MSH6P52701 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
MSH6P52701 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
MSH6P52701 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
MSH6P52701 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
MSH6P52701 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC28.28■■■□□ 2.12
MSH6P52701 NIFKP9-201ENST00000419265 221 ntBASIC28.28■■■□□ 2.12
MSH6P52701 KSR1P1-201ENST00000446298 240 ntBASIC28.28■■■□□ 2.12
MSH6P52701 KRT18P56-201ENST00000507275 550 ntBASIC28.28■■■□□ 2.12
MSH6P52701 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC28.28■■■□□ 2.12
MSH6P52701 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
MSH6P52701 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
MSH6P52701 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
MSH6P52701 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC28.27■■■□□ 2.12
MSH6P52701 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
MSH6P52701 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC28.27■■■□□ 2.12
MSH6P52701 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC28.27■■■□□ 2.12
MSH6P52701 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC28.27■■■□□ 2.12
MSH6P52701 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC28.27■■■□□ 2.12
MSH6P52701 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC28.27■■■□□ 2.12
MSH6P52701 CR392000.1-201ENST00000624770 1228 ntBASIC28.27■■■□□ 2.12
MSH6P52701 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
MSH6P52701 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC28.27■■■□□ 2.12
MSH6P52701 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
MSH6P52701 AC027702.1-201ENST00000563810 1770 ntBASIC28.27■■■□□ 2.12
MSH6P52701 KRT16P1-201ENST00000399124 1418 ntBASIC28.27■■■□□ 2.12
MSH6P52701 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
MSH6P52701 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
MSH6P52701 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
MSH6P52701 ISCU-203ENST00000431221 799 ntTSL 2 BASIC28.26■■■□□ 2.12
MSH6P52701 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC28.26■■■□□ 2.12
MSH6P52701 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC28.26■■■□□ 2.11
MSH6P52701 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC28.26■■■□□ 2.11
MSH6P52701 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
MSH6P52701 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
MSH6P52701 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH6P52701 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
MSH6P52701 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC28.25■■■□□ 2.11
MSH6P52701 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
MSH6P52701 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC28.25■■■□□ 2.11
MSH6P52701 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC28.25■■■□□ 2.11
MSH6P52701 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH6P52701 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH6P52701 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
MSH6P52701 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH6P52701 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH6P52701 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH6P52701 CRYGFP-201ENST00000418459 633 ntBASIC28.24■■■□□ 2.11
MSH6P52701 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
MSH6P52701 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
MSH6P52701 PNN-205ENST00000556530 601 ntTSL 2 BASIC28.24■■■□□ 2.11
MSH6P52701 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC28.24■■■□□ 2.11
MSH6P52701 LINC01238-205ENST00000567549 1107 ntBASIC28.24■■■□□ 2.11
MSH6P52701 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC28.24■■■□□ 2.11
MSH6P52701 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH6P52701 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH6P52701 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH6P52701 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC28.24■■■□□ 2.11
MSH6P52701 AC063952.2-201ENST00000498792 1227 ntBASIC28.24■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms