Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.1■□□□□ 0.97
PTPN9P43378 GPX1P1-201ENST00000388829 606 ntBASIC21.1■□□□□ 0.97
PTPN9P43378 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN9P43378 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.1■□□□□ 0.97
PTPN9P43378 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN9P43378 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN9P43378 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.1■□□□□ 0.97
PTPN9P43378 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN9P43378 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.1■□□□□ 0.97
PTPN9P43378 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN9P43378 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN9P43378 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN9P43378 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.09■□□□□ 0.97
PTPN9P43378 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN9P43378 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.09■□□□□ 0.97
PTPN9P43378 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN9P43378 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PTPN9P43378 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN9P43378 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN9P43378 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN9P43378 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PTPN9P43378 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.09■□□□□ 0.97
PTPN9P43378 LSM12P1-201ENST00000411836 588 ntBASIC21.09■□□□□ 0.97
PTPN9P43378 BX276092.2-201ENST00000417668 665 ntBASIC21.09■□□□□ 0.97
PTPN9P43378 TSPY6P-201ENST00000448518 926 ntBASIC21.09■□□□□ 0.97
PTPN9P43378 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.09■□□□□ 0.97
PTPN9P43378 AC090192.1-201ENST00000517740 490 ntBASIC21.09■□□□□ 0.97
PTPN9P43378 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PTPN9P43378 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.09■□□□□ 0.97
PTPN9P43378 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.09■□□□□ 0.97
PTPN9P43378 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.09■□□□□ 0.97
PTPN9P43378 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.09■□□□□ 0.97
PTPN9P43378 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN9P43378 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN9P43378 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN9P43378 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN9P43378 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTPN9P43378 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTPN9P43378 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PTPN9P43378 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTPN9P43378 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
PTPN9P43378 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTPN9P43378 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.08■□□□□ 0.97
PTPN9P43378 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTPN9P43378 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PTPN9P43378 MIPEPP3-201ENST00000412105 444 ntBASIC21.08■□□□□ 0.97
PTPN9P43378 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.08■□□□□ 0.97
PTPN9P43378 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
PTPN9P43378 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.08■□□□□ 0.97
PTPN9P43378 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
PTPN9P43378 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.08■□□□□ 0.97
PTPN9P43378 SMG8-203ENST00000578922 2178 ntBASIC21.08■□□□□ 0.97
PTPN9P43378 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.08■□□□□ 0.97
PTPN9P43378 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
PTPN9P43378 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.08■□□□□ 0.96
PTPN9P43378 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.08■□□□□ 0.96
PTPN9P43378 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PTPN9P43378 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PTPN9P43378 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.08■□□□□ 0.96
PTPN9P43378 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN9P43378 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN9P43378 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN9P43378 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN9P43378 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PTPN9P43378 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
PTPN9P43378 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
PTPN9P43378 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.07■□□□□ 0.96
PTPN9P43378 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.07■□□□□ 0.96
PTPN9P43378 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.07■□□□□ 0.96
PTPN9P43378 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
PTPN9P43378 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN9P43378 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
PTPN9P43378 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.06■□□□□ 0.96
PTPN9P43378 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
PTPN9P43378 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
PTPN9P43378 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN9P43378 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PTPN9P43378 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.06■□□□□ 0.96
PTPN9P43378 SLC29A4P1-201ENST00000398760 971 ntBASIC21.06■□□□□ 0.96
PTPN9P43378 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.06■□□□□ 0.96
PTPN9P43378 C2orf69P4-201ENST00000565394 541 ntBASIC21.06■□□□□ 0.96
PTPN9P43378 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
PTPN9P43378 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.06■□□□□ 0.96
PTPN9P43378 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.06■□□□□ 0.96
PTPN9P43378 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.06■□□□□ 0.96
PTPN9P43378 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN9P43378 PTBP1P-201ENST00000554374 1601 ntBASIC21.06■□□□□ 0.96
PTPN9P43378 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN9P43378 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN9P43378 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN9P43378 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN9P43378 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN9P43378 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.06■□□□□ 0.96
PTPN9P43378 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.06■□□□□ 0.96
PTPN9P43378 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN9P43378 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN9P43378 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN9P43378 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.05■□□□□ 0.96
PTPN9P43378 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.05■□□□□ 0.96
PTPN9P43378 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms