Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.3■□□□□ 0.68
MSX2P35548 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
MSX2P35548 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.3■□□□□ 0.68
MSX2P35548 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.3■□□□□ 0.68
MSX2P35548 AP004607.4-201ENST00000530158 1459 ntBASIC19.3■□□□□ 0.68
MSX2P35548 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.3■□□□□ 0.68
MSX2P35548 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.3■□□□□ 0.68
MSX2P35548 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.3■□□□□ 0.68
MSX2P35548 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MSX2P35548 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
MSX2P35548 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
MSX2P35548 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
MSX2P35548 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.29■□□□□ 0.68
MSX2P35548 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MSX2P35548 NEFHP1-201ENST00000412845 2629 ntBASIC19.29■□□□□ 0.68
MSX2P35548 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.29■□□□□ 0.68
MSX2P35548 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.29■□□□□ 0.68
MSX2P35548 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSX2P35548 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
MSX2P35548 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
MSX2P35548 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.28■□□□□ 0.68
MSX2P35548 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.28■□□□□ 0.68
MSX2P35548 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
MSX2P35548 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
MSX2P35548 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.28■□□□□ 0.68
MSX2P35548 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.28■□□□□ 0.68
MSX2P35548 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.28■□□□□ 0.68
MSX2P35548 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.28■□□□□ 0.68
MSX2P35548 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.28■□□□□ 0.68
MSX2P35548 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.28■□□□□ 0.68
MSX2P35548 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.28■□□□□ 0.68
MSX2P35548 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSX2P35548 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
MSX2P35548 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.28■□□□□ 0.68
MSX2P35548 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.28■□□□□ 0.68
MSX2P35548 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.28■□□□□ 0.68
MSX2P35548 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSX2P35548 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSX2P35548 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.27■□□□□ 0.68
MSX2P35548 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
MSX2P35548 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSX2P35548 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.27■□□□□ 0.68
MSX2P35548 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSX2P35548 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
MSX2P35548 GUSBP5-201ENST00000418136 578 ntBASIC19.27■□□□□ 0.68
MSX2P35548 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.27■□□□□ 0.68
MSX2P35548 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSX2P35548 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSX2P35548 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.27■□□□□ 0.68
MSX2P35548 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSX2P35548 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSX2P35548 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSX2P35548 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
MSX2P35548 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.27■□□□□ 0.67
MSX2P35548 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
MSX2P35548 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
MSX2P35548 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.27■□□□□ 0.67
MSX2P35548 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
MSX2P35548 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
MSX2P35548 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms