Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 C1QBPP2-201ENST00000528754 825 ntBASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 FAM197Y4-202ENST00000622692 608 ntBASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 RN7SL471P-201ENST00000580476 299 ntBASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 AC120498.8-201ENST00000614275 531 ntBASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 AL359736.2-201ENST00000621992 437 ntBASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 AC023632.3-201ENST00000521633 145 ntBASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
C1QTNF3-AMACRE9PGA6 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 UBE2SP1-201ENST00000450587 669 ntBASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 RPPH1-201ENST00000516869 333 ntBASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC233263.1-201ENST00000578059 224 ntBASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms