Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 AC141586.5-201ENST00000624546 2050 ntBASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 NOC2LP2-201ENST00000407594 1944 ntBASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN3Q8NCR9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLRN3Q8NCR9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.21■□□□□ 0.18
CLRN3Q8NCR9 AC135050.7-201ENST00000624508 2218 ntBASIC16.21■□□□□ 0.18
CLRN3Q8NCR9 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 AC022413.1-201ENST00000624602 984 ntBASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN3Q8NCR9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 CEP120-209ENST00000515110 606 ntTSL 3 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms