Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 AL356309.3-201ENST00000624132 1934 ntBASIC12.74□□□□□ -0.37
LINC00643Q86TS7 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 AC007225.1-201ENST00000566331 1836 ntBASIC12.74□□□□□ -0.37
LINC00643Q86TS7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 AC104581.1-202ENST00000635932 2618 ntBASIC12.74□□□□□ -0.37
LINC00643Q86TS7 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 CA15P2-201ENST00000611168 834 ntBASIC12.74□□□□□ -0.37
LINC00643Q86TS7 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 Z82202.1-201ENST00000623446 1880 ntBASIC12.74□□□□□ -0.37
LINC00643Q86TS7 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
LINC00643Q86TS7 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00643Q86TS7 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 AC093484.2-201ENST00000580996 2166 ntBASIC12.72□□□□□ -0.37
LINC00643Q86TS7 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms