Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.46■□□□□ 0.38
USF3Q68DE3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
USF3Q68DE3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF3Q68DE3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.45■□□□□ 0.38
USF3Q68DE3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.45■□□□□ 0.38
USF3Q68DE3 Z99916.2-201ENST00000604037 246 ntBASIC17.45■□□□□ 0.38
USF3Q68DE3 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF3Q68DE3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
USF3Q68DE3 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF3Q68DE3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF3Q68DE3 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.45■□□□□ 0.38
USF3Q68DE3 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF3Q68DE3 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.45■□□□□ 0.38
USF3Q68DE3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.45■□□□□ 0.38
USF3Q68DE3 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.45■□□□□ 0.38
USF3Q68DE3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF3Q68DE3 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF3Q68DE3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF3Q68DE3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF3Q68DE3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.44■□□□□ 0.38
USF3Q68DE3 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.44■□□□□ 0.38
USF3Q68DE3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 ECEL1P3-201ENST00000427961 737 ntBASIC17.44■□□□□ 0.38
USF3Q68DE3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.44■□□□□ 0.38
USF3Q68DE3 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
USF3Q68DE3 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.44■□□□□ 0.38
USF3Q68DE3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.44■□□□□ 0.38
USF3Q68DE3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.44■□□□□ 0.38
USF3Q68DE3 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.44■□□□□ 0.38
USF3Q68DE3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.44■□□□□ 0.38
USF3Q68DE3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
USF3Q68DE3 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
USF3Q68DE3 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.44■□□□□ 0.38
USF3Q68DE3 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.44■□□□□ 0.38
USF3Q68DE3 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF3Q68DE3 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.44■□□□□ 0.38
USF3Q68DE3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF3Q68DE3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.43■□□□□ 0.38
USF3Q68DE3 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USF3Q68DE3 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USF3Q68DE3 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USF3Q68DE3 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
USF3Q68DE3 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USF3Q68DE3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF3Q68DE3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.43■□□□□ 0.38
USF3Q68DE3 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.43■□□□□ 0.38
USF3Q68DE3 AL157384.1-201ENST00000445995 2473 ntBASIC17.43■□□□□ 0.38
USF3Q68DE3 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.43■□□□□ 0.38
USF3Q68DE3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
USF3Q68DE3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF3Q68DE3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.43■□□□□ 0.38
USF3Q68DE3 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
USF3Q68DE3 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.43■□□□□ 0.38
USF3Q68DE3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF3Q68DE3 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.43■□□□□ 0.38
USF3Q68DE3 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.43■□□□□ 0.38
USF3Q68DE3 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.43■□□□□ 0.38
USF3Q68DE3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.43■□□□□ 0.38
USF3Q68DE3 AC105020.6-201ENST00000621523 1217 ntBASIC17.43■□□□□ 0.38
USF3Q68DE3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.43■□□□□ 0.38
USF3Q68DE3 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
USF3Q68DE3 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
USF3Q68DE3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
USF3Q68DE3 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.42■□□□□ 0.38
USF3Q68DE3 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.42■□□□□ 0.38
USF3Q68DE3 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.42■□□□□ 0.38
USF3Q68DE3 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
USF3Q68DE3 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.42■□□□□ 0.38
USF3Q68DE3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.42■□□□□ 0.38
USF3Q68DE3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
USF3Q68DE3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF3Q68DE3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.42■□□□□ 0.38
USF3Q68DE3 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
USF3Q68DE3 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.41■□□□□ 0.38
USF3Q68DE3 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
USF3Q68DE3 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.41■□□□□ 0.38
USF3Q68DE3 MTDHP1-201ENST00000605323 784 ntBASIC17.41■□□□□ 0.38
USF3Q68DE3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF3Q68DE3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USF3Q68DE3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms