Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CX3CL1P78423 AL137784.2-201ENST00000607332 1000 ntBASIC16.33■□□□□ 0.2
CX3CL1P78423 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC16.33■□□□□ 0.2
CX3CL1P78423 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CX3CL1P78423 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.33■□□□□ 0.2
CX3CL1P78423 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
CX3CL1P78423 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CX3CL1P78423 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.33■□□□□ 0.2
CX3CL1P78423 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CX3CL1P78423 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CX3CL1P78423 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CX3CL1P78423 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
CX3CL1P78423 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
CX3CL1P78423 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CX3CL1P78423 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CX3CL1P78423 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.32■□□□□ 0.2
CX3CL1P78423 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 AC004911.1-201ENST00000416316 871 ntBASIC16.32■□□□□ 0.2
CX3CL1P78423 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CX3CL1P78423 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC16.32■□□□□ 0.2
CX3CL1P78423 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC16.32■□□□□ 0.2
CX3CL1P78423 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC16.32■□□□□ 0.2
CX3CL1P78423 AC007322.4-201ENST00000509611 723 ntBASIC16.32■□□□□ 0.2
CX3CL1P78423 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.32■□□□□ 0.2
CX3CL1P78423 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC16.32■□□□□ 0.2
CX3CL1P78423 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.32■□□□□ 0.2
CX3CL1P78423 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.32■□□□□ 0.2
CX3CL1P78423 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.32■□□□□ 0.2
CX3CL1P78423 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CL1P78423 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.31■□□□□ 0.2
CX3CL1P78423 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.31■□□□□ 0.2
CX3CL1P78423 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.31■□□□□ 0.2
CX3CL1P78423 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CX3CL1P78423 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CX3CL1P78423 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.31■□□□□ 0.2
CX3CL1P78423 CNN2P6-201ENST00000439038 900 ntBASIC16.31■□□□□ 0.2
CX3CL1P78423 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CX3CL1P78423 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.31■□□□□ 0.2
CX3CL1P78423 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.31■□□□□ 0.2
CX3CL1P78423 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.31■□□□□ 0.2
CX3CL1P78423 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CL1P78423 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CX3CL1P78423 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC16.3■□□□□ 0.2
CX3CL1P78423 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CX3CL1P78423 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CX3CL1P78423 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC16.3■□□□□ 0.2
CX3CL1P78423 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 SAPCD2P1-201ENST00000395413 1184 ntBASIC16.3■□□□□ 0.2
CX3CL1P78423 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CX3CL1P78423 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC16.3■□□□□ 0.2
CX3CL1P78423 AL162412.1-201ENST00000567129 965 ntBASIC16.3■□□□□ 0.2
CX3CL1P78423 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 AC080038.1-201ENST00000611274 1154 ntBASIC16.3■□□□□ 0.2
CX3CL1P78423 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CX3CL1P78423 AC231657.2-201ENST00000624556 255 ntBASIC16.3■□□□□ 0.2
CX3CL1P78423 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CL1P78423 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms