Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.32■□□□□ 0.68
RAE1P78406 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.32■□□□□ 0.68
RAE1P78406 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.32■□□□□ 0.68
RAE1P78406 MIR5787-201ENST00000611784 55 ntBASIC19.32■□□□□ 0.68
RAE1P78406 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 AC068338.2-201ENST00000563278 1430 ntBASIC19.32■□□□□ 0.68
RAE1P78406 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
RAE1P78406 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RAE1P78406 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RAE1P78406 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 AFG3L1P-217ENST00000557444 2447 ntBASIC19.31■□□□□ 0.68
RAE1P78406 DPP3P2-201ENST00000416030 1696 ntBASIC19.31■□□□□ 0.68
RAE1P78406 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.31■□□□□ 0.68
RAE1P78406 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.31■□□□□ 0.68
RAE1P78406 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RAE1P78406 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.31■□□□□ 0.68
RAE1P78406 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RAE1P78406 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.31■□□□□ 0.68
RAE1P78406 AL356652.1-201ENST00000615962 565 ntBASIC19.31■□□□□ 0.68
RAE1P78406 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
RAE1P78406 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.31■□□□□ 0.68
RAE1P78406 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 TCF3P1-201ENST00000423021 1937 ntBASIC19.31■□□□□ 0.68
RAE1P78406 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.31■□□□□ 0.68
RAE1P78406 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAE1P78406 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.31■□□□□ 0.68
RAE1P78406 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.3■□□□□ 0.68
RAE1P78406 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RAE1P78406 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.3■□□□□ 0.68
RAE1P78406 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.3■□□□□ 0.68
RAE1P78406 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RAE1P78406 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RAE1P78406 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
RAE1P78406 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAE1P78406 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.3■□□□□ 0.68
RAE1P78406 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.3■□□□□ 0.68
RAE1P78406 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RAE1P78406 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAE1P78406 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.3■□□□□ 0.68
RAE1P78406 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAE1P78406 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAE1P78406 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
RAE1P78406 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.29■□□□□ 0.68
RAE1P78406 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAE1P78406 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAE1P78406 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.29■□□□□ 0.68
RAE1P78406 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
RAE1P78406 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAE1P78406 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
RAE1P78406 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.29■□□□□ 0.68
RAE1P78406 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.29■□□□□ 0.68
RAE1P78406 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAE1P78406 RARRES2P4-201ENST00000514074 484 ntBASIC19.29■□□□□ 0.68
RAE1P78406 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.29■□□□□ 0.68
RAE1P78406 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.29■□□□□ 0.68
RAE1P78406 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
RAE1P78406 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.29■□□□□ 0.68
RAE1P78406 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.29■□□□□ 0.68
RAE1P78406 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.29■□□□□ 0.68
RAE1P78406 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
RAE1P78406 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.29■□□□□ 0.68
RAE1P78406 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RAE1P78406 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RAE1P78406 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RAE1P78406 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RAE1P78406 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
RAE1P78406 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RAE1P78406 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RAE1P78406 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.28■□□□□ 0.68
RAE1P78406 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
RAE1P78406 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RAE1P78406 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RAE1P78406 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RAE1P78406 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RAE1P78406 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
RAE1P78406 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAE1P78406 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAE1P78406 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RAE1P78406 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAE1P78406 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms