Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A4P53420 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A4P53420 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.93■■□□□ 1.1
COL4A4P53420 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
COL4A4P53420 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.92■■□□□ 1.1
COL4A4P53420 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.92■■□□□ 1.1
COL4A4P53420 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.92■■□□□ 1.1
COL4A4P53420 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 AC026471.5-201ENST00000615068 467 ntBASIC21.92■■□□□ 1.1
COL4A4P53420 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.92■■□□□ 1.1
COL4A4P53420 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A4P53420 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.92■■□□□ 1.1
COL4A4P53420 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.91■■□□□ 1.1
COL4A4P53420 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.91■■□□□ 1.1
COL4A4P53420 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.91■■□□□ 1.1
COL4A4P53420 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.91■■□□□ 1.1
COL4A4P53420 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.91■■□□□ 1.1
COL4A4P53420 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.91■■□□□ 1.1
COL4A4P53420 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.91■■□□□ 1.1
COL4A4P53420 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.91■■□□□ 1.1
COL4A4P53420 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.91■■□□□ 1.1
COL4A4P53420 KRT8P9-201ENST00000558927 1449 ntBASIC21.91■■□□□ 1.1
COL4A4P53420 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.91■■□□□ 1.1
COL4A4P53420 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.91■■□□□ 1.1
COL4A4P53420 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.91■■□□□ 1.1
COL4A4P53420 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 AC092865.7-201ENST00000641832 219 ntBASIC21.91■■□□□ 1.1
COL4A4P53420 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A4P53420 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A4P53420 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
COL4A4P53420 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A4P53420 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.9■■□□□ 1.1
COL4A4P53420 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.9■■□□□ 1.1
COL4A4P53420 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
COL4A4P53420 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.9■■□□□ 1.1
COL4A4P53420 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A4P53420 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.9■■□□□ 1.1
COL4A4P53420 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
COL4A4P53420 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A4P53420 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.9■■□□□ 1.1
COL4A4P53420 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.9■■□□□ 1.1
COL4A4P53420 FBXW4P1-201ENST00000426721 2239 ntBASIC21.9■■□□□ 1.1
COL4A4P53420 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL4A4P53420 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL4A4P53420 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL4A4P53420 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL4A4P53420 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
COL4A4P53420 AP003071.4-201ENST00000562276 1284 ntBASIC21.89■■□□□ 1.1
COL4A4P53420 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.89■■□□□ 1.1
COL4A4P53420 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A4P53420 Z98882.1-201ENST00000622160 2253 ntBASIC21.89■■□□□ 1.09
COL4A4P53420 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A4P53420 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A4P53420 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A4P53420 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.89■■□□□ 1.09
COL4A4P53420 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A4P53420 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A4P53420 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
COL4A4P53420 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A4P53420 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
COL4A4P53420 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.88■■□□□ 1.09
COL4A4P53420 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A4P53420 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A4P53420 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A4P53420 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
COL4A4P53420 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A4P53420 KRT18P57-201ENST00000443599 1254 ntBASIC21.88■■□□□ 1.09
COL4A4P53420 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
COL4A4P53420 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A4P53420 NUDT16P1-203ENST00000513809 620 ntBASIC21.88■■□□□ 1.09
COL4A4P53420 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A4P53420 AC005829.2-201ENST00000571422 1056 ntBASIC21.88■■□□□ 1.09
COL4A4P53420 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.88■■□□□ 1.09
COL4A4P53420 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms