Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 FAM21FP-204ENST00000608637 956 ntBASIC19.06■□□□□ 0.64
SOX3P41225 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.06■□□□□ 0.64
SOX3P41225 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.06■□□□□ 0.64
SOX3P41225 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.06■□□□□ 0.64
SOX3P41225 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.06■□□□□ 0.64
SOX3P41225 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
SOX3P41225 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.05■□□□□ 0.64
SOX3P41225 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
SOX3P41225 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.05■□□□□ 0.64
SOX3P41225 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.05■□□□□ 0.64
SOX3P41225 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.05■□□□□ 0.64
SOX3P41225 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.05■□□□□ 0.64
SOX3P41225 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.05■□□□□ 0.64
SOX3P41225 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.05■□□□□ 0.64
SOX3P41225 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
SOX3P41225 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SOX3P41225 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.05■□□□□ 0.64
SOX3P41225 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SOX3P41225 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SOX3P41225 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SOX3P41225 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SOX3P41225 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.04■□□□□ 0.64
SOX3P41225 MIPEPP3-201ENST00000412105 444 ntBASIC19.04■□□□□ 0.64
SOX3P41225 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SOX3P41225 AC007322.3-201ENST00000426526 701 ntBASIC19.04■□□□□ 0.64
SOX3P41225 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.04■□□□□ 0.64
SOX3P41225 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 AC010980.2-201ENST00000587099 1412 ntBASIC19.04■□□□□ 0.64
SOX3P41225 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SOX3P41225 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.04■□□□□ 0.64
SOX3P41225 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SOX3P41225 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SOX3P41225 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SOX3P41225 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.03■□□□□ 0.64
SOX3P41225 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SOX3P41225 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
SOX3P41225 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.03■□□□□ 0.64
SOX3P41225 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.03■□□□□ 0.64
SOX3P41225 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.03■□□□□ 0.64
SOX3P41225 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.03■□□□□ 0.64
SOX3P41225 AC098934.4-201ENST00000564127 592 ntBASIC19.03■□□□□ 0.64
SOX3P41225 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.03■□□□□ 0.64
SOX3P41225 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.03■□□□□ 0.64
SOX3P41225 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.03■□□□□ 0.64
SOX3P41225 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SOX3P41225 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SOX3P41225 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.03■□□□□ 0.64
SOX3P41225 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SOX3P41225 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.02■□□□□ 0.64
SOX3P41225 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.02■□□□□ 0.64
SOX3P41225 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SOX3P41225 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SOX3P41225 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.02■□□□□ 0.64
SOX3P41225 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SOX3P41225 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms