Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.6■□□□□ 0.57
RFC3P40938 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.6■□□□□ 0.57
RFC3P40938 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.6■□□□□ 0.57
RFC3P40938 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
RFC3P40938 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC3P40938 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RFC3P40938 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFC3P40938 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.59■□□□□ 0.57
RFC3P40938 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFC3P40938 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
RFC3P40938 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFC3P40938 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFC3P40938 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.59■□□□□ 0.57
RFC3P40938 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFC3P40938 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFC3P40938 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.59■□□□□ 0.57
RFC3P40938 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.59■□□□□ 0.57
RFC3P40938 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
RFC3P40938 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFC3P40938 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFC3P40938 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RFC3P40938 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
RFC3P40938 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.59■□□□□ 0.57
RFC3P40938 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
RFC3P40938 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFC3P40938 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFC3P40938 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.58■□□□□ 0.57
RFC3P40938 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RFC3P40938 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
RFC3P40938 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.58■□□□□ 0.56
RFC3P40938 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.58■□□□□ 0.56
RFC3P40938 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.58■□□□□ 0.56
RFC3P40938 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
RFC3P40938 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.58■□□□□ 0.56
RFC3P40938 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 SOX15-203ENST00000570788 1093 ntBASIC18.58■□□□□ 0.56
RFC3P40938 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.58■□□□□ 0.56
RFC3P40938 AC008403.3-201ENST00000598924 454 ntBASIC18.58■□□□□ 0.56
RFC3P40938 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
RFC3P40938 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
RFC3P40938 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.58■□□□□ 0.56
RFC3P40938 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 AF106564.1-201ENST00000607058 2553 ntBASIC18.58■□□□□ 0.56
RFC3P40938 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.58■□□□□ 0.56
RFC3P40938 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
RFC3P40938 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFC3P40938 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
RFC3P40938 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.57■□□□□ 0.56
RFC3P40938 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RFC3P40938 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFC3P40938 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFC3P40938 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFC3P40938 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
RFC3P40938 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.57■□□□□ 0.56
RFC3P40938 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFC3P40938 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFC3P40938 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFC3P40938 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
RFC3P40938 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFC3P40938 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFC3P40938 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.57■□□□□ 0.56
RFC3P40938 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFC3P40938 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFC3P40938 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.56■□□□□ 0.56
RFC3P40938 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
RFC3P40938 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.56■□□□□ 0.56
RFC3P40938 GCSHP5-201ENST00000443090 522 ntBASIC18.56■□□□□ 0.56
RFC3P40938 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
RFC3P40938 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.56■□□□□ 0.56
RFC3P40938 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.56■□□□□ 0.56
RFC3P40938 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 AC142381.4-202ENST00000563973 229 ntBASIC18.56■□□□□ 0.56
RFC3P40938 C2orf69P4-201ENST00000565394 541 ntBASIC18.56■□□□□ 0.56
RFC3P40938 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.56■□□□□ 0.56
RFC3P40938 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
RFC3P40938 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.56■□□□□ 0.56
RFC3P40938 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms