Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
COL9A1P20849 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
COL9A1P20849 AL031133.1-201ENST00000406807 723 ntBASIC21.04■□□□□ 0.96
COL9A1P20849 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.04■□□□□ 0.96
COL9A1P20849 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.04■□□□□ 0.96
COL9A1P20849 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
COL9A1P20849 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
COL9A1P20849 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.04■□□□□ 0.96
COL9A1P20849 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
COL9A1P20849 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
COL9A1P20849 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
COL9A1P20849 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.04■□□□□ 0.96
COL9A1P20849 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL9A1P20849 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.03■□□□□ 0.96
COL9A1P20849 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.03■□□□□ 0.96
COL9A1P20849 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.03■□□□□ 0.96
COL9A1P20849 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.03■□□□□ 0.96
COL9A1P20849 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.03■□□□□ 0.96
COL9A1P20849 AC063952.2-201ENST00000498792 1227 ntBASIC21.03■□□□□ 0.96
COL9A1P20849 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC21.03■□□□□ 0.96
COL9A1P20849 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.03■□□□□ 0.96
COL9A1P20849 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.03■□□□□ 0.96
COL9A1P20849 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL9A1P20849 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.02■□□□□ 0.96
COL9A1P20849 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
COL9A1P20849 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL9A1P20849 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL9A1P20849 FAM197Y1-201ENST00000421178 764 ntBASIC21.02■□□□□ 0.96
COL9A1P20849 CDV3P1-201ENST00000471403 739 ntBASIC21.02■□□□□ 0.96
COL9A1P20849 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL9A1P20849 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.02■□□□□ 0.96
COL9A1P20849 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.02■□□□□ 0.96
COL9A1P20849 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
COL9A1P20849 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL9A1P20849 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.02■□□□□ 0.95
COL9A1P20849 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.01■□□□□ 0.95
COL9A1P20849 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL9A1P20849 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL9A1P20849 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL9A1P20849 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL9A1P20849 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL9A1P20849 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.01■□□□□ 0.95
COL9A1P20849 AF186192.3-201ENST00000583427 947 ntBASIC21.01■□□□□ 0.95
COL9A1P20849 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL9A1P20849 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.01■□□□□ 0.95
COL9A1P20849 AC100791.3-201ENST00000617619 330 ntBASIC21.01■□□□□ 0.95
COL9A1P20849 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.01■□□□□ 0.95
COL9A1P20849 AC087633.2-202ENST00000565166 1439 ntBASIC21.01■□□□□ 0.95
COL9A1P20849 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL9A1P20849 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL9A1P20849 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.01■□□□□ 0.95
COL9A1P20849 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL9A1P20849 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21■□□□□ 0.95
COL9A1P20849 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
COL9A1P20849 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21■□□□□ 0.95
COL9A1P20849 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL9A1P20849 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21■□□□□ 0.95
COL9A1P20849 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
COL9A1P20849 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21■□□□□ 0.95
COL9A1P20849 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
COL9A1P20849 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21■□□□□ 0.95
COL9A1P20849 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21■□□□□ 0.95
COL9A1P20849 MYC-208ENST00000641036 567 ntBASIC21■□□□□ 0.95
COL9A1P20849 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL9A1P20849 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL9A1P20849 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21■□□□□ 0.95
COL9A1P20849 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL9A1P20849 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL9A1P20849 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21■□□□□ 0.95
COL9A1P20849 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21■□□□□ 0.95
COL9A1P20849 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL9A1P20849 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21■□□□□ 0.95
COL9A1P20849 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL9A1P20849 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms