Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC1P18887 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.22■□□□□ 0.83
XRCC1P18887 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
XRCC1P18887 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
XRCC1P18887 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC1P18887 CDV3P1-201ENST00000471403 739 ntBASIC20.22■□□□□ 0.83
XRCC1P18887 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.22■□□□□ 0.83
XRCC1P18887 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC1P18887 FAM21FP-204ENST00000608637 956 ntBASIC20.22■□□□□ 0.83
XRCC1P18887 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC1P18887 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC1P18887 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.22■□□□□ 0.83
XRCC1P18887 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC1P18887 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC1P18887 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.21■□□□□ 0.83
XRCC1P18887 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.21■□□□□ 0.83
XRCC1P18887 MIPEPP3-201ENST00000412105 444 ntBASIC20.21■□□□□ 0.83
XRCC1P18887 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.21■□□□□ 0.83
XRCC1P18887 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.21■□□□□ 0.83
XRCC1P18887 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
XRCC1P18887 GABARAPL3-202ENST00000624044 1851 ntBASIC20.21■□□□□ 0.83
XRCC1P18887 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.21■□□□□ 0.83
XRCC1P18887 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.21■□□□□ 0.83
XRCC1P18887 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
XRCC1P18887 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
XRCC1P18887 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC1P18887 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC1P18887 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.2■□□□□ 0.82
XRCC1P18887 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.2■□□□□ 0.82
XRCC1P18887 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.2■□□□□ 0.82
XRCC1P18887 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
XRCC1P18887 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
XRCC1P18887 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC1P18887 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.2■□□□□ 0.82
XRCC1P18887 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.2■□□□□ 0.82
XRCC1P18887 MIR4758-201ENST00000577688 71 ntBASIC20.2■□□□□ 0.82
XRCC1P18887 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.2■□□□□ 0.82
XRCC1P18887 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.2■□□□□ 0.82
XRCC1P18887 AC133041.1-202ENST00000642053 222 ntBASIC20.2■□□□□ 0.82
XRCC1P18887 AP005212.1-201ENST00000581547 1997 ntBASIC20.2■□□□□ 0.82
XRCC1P18887 AC073314.1-201ENST00000568729 2216 ntBASIC20.2■□□□□ 0.82
XRCC1P18887 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
XRCC1P18887 PCDHAC2-203ENST00000615316 3011 ntBASIC20.2■□□□□ 0.82
XRCC1P18887 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.2■□□□□ 0.82
XRCC1P18887 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC1P18887 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC1P18887 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
XRCC1P18887 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC1P18887 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC1P18887 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.19■□□□□ 0.82
XRCC1P18887 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.19■□□□□ 0.82
XRCC1P18887 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
XRCC1P18887 AC010980.2-201ENST00000587099 1412 ntBASIC20.19■□□□□ 0.82
XRCC1P18887 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
XRCC1P18887 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
XRCC1P18887 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.19■□□□□ 0.82
XRCC1P18887 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.19■□□□□ 0.82
XRCC1P18887 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.19■□□□□ 0.82
XRCC1P18887 AC069152.1-201ENST00000438030 544 ntBASIC20.19■□□□□ 0.82
XRCC1P18887 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.19■□□□□ 0.82
XRCC1P18887 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.19■□□□□ 0.82
XRCC1P18887 AFG3L1P-217ENST00000557444 2447 ntBASIC20.19■□□□□ 0.82
XRCC1P18887 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
XRCC1P18887 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
XRCC1P18887 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
XRCC1P18887 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.18■□□□□ 0.82
XRCC1P18887 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.18■□□□□ 0.82
XRCC1P18887 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.18■□□□□ 0.82
XRCC1P18887 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.18■□□□□ 0.82
XRCC1P18887 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.18■□□□□ 0.82
XRCC1P18887 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.18■□□□□ 0.82
XRCC1P18887 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.18■□□□□ 0.82
XRCC1P18887 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.18■□□□□ 0.82
XRCC1P18887 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC1P18887 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.18■□□□□ 0.82
XRCC1P18887 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.17■□□□□ 0.82
XRCC1P18887 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms