Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VCANP13611 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCANP13611 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VCANP13611 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.19■□□□□ 0.98
VCANP13611 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
VCANP13611 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
VCANP13611 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
VCANP13611 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.18■□□□□ 0.98
VCANP13611 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 AL845331.1-201ENST00000424978 1190 ntBASIC21.18■□□□□ 0.98
VCANP13611 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
VCANP13611 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 AC012313.10-201ENST00000623509 926 ntBASIC21.18■□□□□ 0.98
VCANP13611 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
VCANP13611 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.18■□□□□ 0.98
VCANP13611 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC21.18■□□□□ 0.98
VCANP13611 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
VCANP13611 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.18■□□□□ 0.98
VCANP13611 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
VCANP13611 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VCANP13611 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCANP13611 RNF152P1-201ENST00000397754 604 ntBASIC21.17■□□□□ 0.98
VCANP13611 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
VCANP13611 C9orf163-202ENST00000624034 2573 ntBASIC21.17■□□□□ 0.98
VCANP13611 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.17■□□□□ 0.98
VCANP13611 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VCANP13611 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.17■□□□□ 0.98
VCANP13611 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.17■□□□□ 0.98
VCANP13611 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.17■□□□□ 0.98
VCANP13611 AL121956.5-201ENST00000625261 221 ntBASIC21.17■□□□□ 0.98
VCANP13611 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.17■□□□□ 0.98
VCANP13611 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCANP13611 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.17■□□□□ 0.98
VCANP13611 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.17■□□□□ 0.98
VCANP13611 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.17■□□□□ 0.98
VCANP13611 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCANP13611 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
VCANP13611 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCANP13611 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCANP13611 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCANP13611 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.16■□□□□ 0.98
VCANP13611 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCANP13611 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.16■□□□□ 0.98
VCANP13611 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.16■□□□□ 0.98
VCANP13611 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VCANP13611 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCANP13611 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCANP13611 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCANP13611 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
VCANP13611 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.16■□□□□ 0.98
VCANP13611 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCANP13611 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.15■□□□□ 0.98
VCANP13611 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
VCANP13611 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.15■□□□□ 0.98
VCANP13611 AC130371.2-201ENST00000619443 611 ntBASIC21.15■□□□□ 0.98
VCANP13611 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
VCANP13611 AC026471.6-201ENST00000622954 1905 ntBASIC21.15■□□□□ 0.98
VCANP13611 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 CDV3P1-201ENST00000471403 739 ntBASIC21.15■□□□□ 0.98
VCANP13611 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.15■□□□□ 0.98
VCANP13611 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.15■□□□□ 0.98
VCANP13611 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCANP13611 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VCANP13611 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.14■□□□□ 0.98
VCANP13611 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VCANP13611 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.14■□□□□ 0.97
VCANP13611 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC21.14■□□□□ 0.97
VCANP13611 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.14■□□□□ 0.97
VCANP13611 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.14■□□□□ 0.97
VCANP13611 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VCANP13611 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
VCANP13611 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
VCANP13611 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.14■□□□□ 0.97
VCANP13611 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
VCANP13611 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
VCANP13611 AC009078.2-202ENST00000463353 338 ntBASIC21.13■□□□□ 0.97
VCANP13611 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.13■□□□□ 0.97
VCANP13611 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21.13■□□□□ 0.97
VCANP13611 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCANP13611 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VCANP13611 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VCANP13611 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms