Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
TRIM13O60858 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM13O60858 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM13O60858 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM13O60858 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.97■□□□□ 0.79
TRIM13O60858 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM13O60858 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
TRIM13O60858 MIR6084-201ENST00000622012 110 ntBASIC19.97■□□□□ 0.79
TRIM13O60858 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM13O60858 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
TRIM13O60858 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
TRIM13O60858 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
TRIM13O60858 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM13O60858 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM13O60858 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM13O60858 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TRIM13O60858 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.96■□□□□ 0.79
TRIM13O60858 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
TRIM13O60858 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.96■□□□□ 0.79
TRIM13O60858 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
TRIM13O60858 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.96■□□□□ 0.79
TRIM13O60858 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.96■□□□□ 0.79
TRIM13O60858 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.96■□□□□ 0.79
TRIM13O60858 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.96■□□□□ 0.79
TRIM13O60858 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
TRIM13O60858 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.96■□□□□ 0.79
TRIM13O60858 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
TRIM13O60858 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.96■□□□□ 0.79
TRIM13O60858 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM13O60858 AC125437.2-201ENST00000625180 2167 ntBASIC19.95■□□□□ 0.78
TRIM13O60858 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
TRIM13O60858 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM13O60858 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
TRIM13O60858 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
TRIM13O60858 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM13O60858 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM13O60858 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM13O60858 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM13O60858 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM13O60858 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM13O60858 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.95■□□□□ 0.78
TRIM13O60858 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM13O60858 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
TRIM13O60858 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM13O60858 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
TRIM13O60858 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM13O60858 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM13O60858 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
TRIM13O60858 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM13O60858 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM13O60858 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
TRIM13O60858 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 IRS3P-201ENST00000223076 1006 ntBASIC19.94■□□□□ 0.78
TRIM13O60858 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.94■□□□□ 0.78
TRIM13O60858 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM13O60858 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM13O60858 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.94■□□□□ 0.78
TRIM13O60858 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
TRIM13O60858 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.94■□□□□ 0.78
TRIM13O60858 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM13O60858 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.94■□□□□ 0.78
TRIM13O60858 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM13O60858 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
TRIM13O60858 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM13O60858 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
TRIM13O60858 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
TRIM13O60858 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TRIM13O60858 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
TRIM13O60858 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TRIM13O60858 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
TRIM13O60858 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.93■□□□□ 0.78
TRIM13O60858 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM13O60858 SLC7A5P2-201ENST00000553010 536 ntBASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms