Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 HMGA1P5-201ENST00000412453 271 ntBASIC19.94■□□□□ 0.78
GFRA3O60609 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.94■□□□□ 0.78
GFRA3O60609 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.94■□□□□ 0.78
GFRA3O60609 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
GFRA3O60609 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.94■□□□□ 0.78
GFRA3O60609 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
GFRA3O60609 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
GFRA3O60609 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
GFRA3O60609 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.93■□□□□ 0.78
GFRA3O60609 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.93■□□□□ 0.78
GFRA3O60609 COX11P1-201ENST00000489116 835 ntBASIC19.93■□□□□ 0.78
GFRA3O60609 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.93■□□□□ 0.78
GFRA3O60609 AC116407.4-201ENST00000623319 1061 ntBASIC19.93■□□□□ 0.78
GFRA3O60609 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.93■□□□□ 0.78
GFRA3O60609 AC005332.1-201ENST00000577698 1310 ntBASIC19.93■□□□□ 0.78
GFRA3O60609 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
GFRA3O60609 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.92■□□□□ 0.78
GFRA3O60609 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.92■□□□□ 0.78
GFRA3O60609 INGX-201ENST00000359239 846 ntBASIC19.92■□□□□ 0.78
GFRA3O60609 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.92■□□□□ 0.78
GFRA3O60609 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
GFRA3O60609 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.92■□□□□ 0.78
GFRA3O60609 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.92■□□□□ 0.78
GFRA3O60609 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.92■□□□□ 0.78
GFRA3O60609 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
GFRA3O60609 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.92■□□□□ 0.78
GFRA3O60609 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.92■□□□□ 0.78
GFRA3O60609 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.92■□□□□ 0.78
GFRA3O60609 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.92■□□□□ 0.78
GFRA3O60609 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.92■□□□□ 0.78
GFRA3O60609 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.92■□□□□ 0.78
GFRA3O60609 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.92■□□□□ 0.78
GFRA3O60609 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.92■□□□□ 0.78
GFRA3O60609 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.91■□□□□ 0.78
GFRA3O60609 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.91■□□□□ 0.78
GFRA3O60609 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.91■□□□□ 0.78
GFRA3O60609 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.91■□□□□ 0.78
GFRA3O60609 AL138966.2-201ENST00000621997 464 ntBASIC19.91■□□□□ 0.78
GFRA3O60609 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.91■□□□□ 0.78
GFRA3O60609 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
GFRA3O60609 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.91■□□□□ 0.78
GFRA3O60609 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.91■□□□□ 0.78
GFRA3O60609 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
GFRA3O60609 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
GFRA3O60609 AC004870.1-201ENST00000315132 882 ntBASIC19.9■□□□□ 0.78
GFRA3O60609 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.9■□□□□ 0.78
GFRA3O60609 AL022342.1-201ENST00000400363 863 ntBASIC19.9■□□□□ 0.78
GFRA3O60609 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.9■□□□□ 0.78
GFRA3O60609 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.9■□□□□ 0.78
GFRA3O60609 AL671277.2-201ENST00000458060 996 ntBASIC19.9■□□□□ 0.78
GFRA3O60609 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.9■□□□□ 0.78
GFRA3O60609 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.9■□□□□ 0.78
GFRA3O60609 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
GFRA3O60609 KRT8P45-201ENST00000414328 1447 ntBASIC19.9■□□□□ 0.78
GFRA3O60609 FSCN1P1-201ENST00000568912 1481 ntBASIC19.9■□□□□ 0.78
GFRA3O60609 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
GFRA3O60609 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.9■□□□□ 0.78
GFRA3O60609 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
GFRA3O60609 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.89■□□□□ 0.77
GFRA3O60609 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
GFRA3O60609 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
GFRA3O60609 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
GFRA3O60609 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
GFRA3O60609 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.89■□□□□ 0.77
GFRA3O60609 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
GFRA3O60609 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.89■□□□□ 0.77
GFRA3O60609 AL845331.1-201ENST00000424978 1190 ntBASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms