Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGB3O15347 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB3O15347 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.35■□□□□ 0.21
HMGB3O15347 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB3O15347 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC16.35■□□□□ 0.21
HMGB3O15347 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB3O15347 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB3O15347 AC121338.2-201ENST00000622535 1744 ntBASIC16.35■□□□□ 0.21
HMGB3O15347 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGB3O15347 AC007225.1-201ENST00000566331 1836 ntBASIC16.35■□□□□ 0.21
HMGB3O15347 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
HMGB3O15347 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGB3O15347 STX4-202ENST00000394998 1498 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGB3O15347 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGB3O15347 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
HMGB3O15347 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGB3O15347 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB3O15347 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB3O15347 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGB3O15347 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HMGB3O15347 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC16.34■□□□□ 0.21
HMGB3O15347 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HMGB3O15347 RBM38-205ENST00000440234 686 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB3O15347 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
HMGB3O15347 Z92544.1-202ENST00000571933 1220 ntBASIC16.34■□□□□ 0.21
HMGB3O15347 MTDHP2-201ENST00000601468 714 ntBASIC16.34■□□□□ 0.21
HMGB3O15347 BRD4-212ENST00000630599 726 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB3O15347 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB3O15347 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB3O15347 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
HMGB3O15347 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB3O15347 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB3O15347 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB3O15347 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB3O15347 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB3O15347 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HMGB3O15347 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGB3O15347 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
HMGB3O15347 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB3O15347 pRNA.6-201ENST00000610482 90 ntBASIC16.33■□□□□ 0.2
HMGB3O15347 pRNA.5-201ENST00000612139 90 ntBASIC16.33■□□□□ 0.2
HMGB3O15347 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
HMGB3O15347 pRNA.11-201ENST00000618423 90 ntBASIC16.33■□□□□ 0.2
HMGB3O15347 pRNA.13-201ENST00000619112 90 ntBASIC16.33■□□□□ 0.2
HMGB3O15347 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB3O15347 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB3O15347 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB3O15347 AP004607.7-201ENST00000527152 1677 ntBASIC16.33■□□□□ 0.2
HMGB3O15347 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HMGB3O15347 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB3O15347 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGB3O15347 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB3O15347 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB3O15347 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HMGB3O15347 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
HMGB3O15347 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
HMGB3O15347 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB3O15347 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HMGB3O15347 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HMGB3O15347 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB3O15347 AC092028.1-203ENST00000608262 953 ntBASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms