Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.78■□□□□ 0.92
CBX4O00257 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.78■□□□□ 0.92
CBX4O00257 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 CLDN5-201ENST00000403084 2357 ntBASIC20.78■□□□□ 0.92
CBX4O00257 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.78■□□□□ 0.92
CBX4O00257 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CBX4O00257 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CBX4O00257 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CBX4O00257 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.77■□□□□ 0.92
CBX4O00257 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.77■□□□□ 0.92
CBX4O00257 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CBX4O00257 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CBX4O00257 AL121603.2-201ENST00000557373 2117 ntBASIC20.77■□□□□ 0.91
CBX4O00257 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CBX4O00257 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.76■□□□□ 0.91
CBX4O00257 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CBX4O00257 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.76■□□□□ 0.91
CBX4O00257 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CBX4O00257 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CBX4O00257 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CBX4O00257 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.76■□□□□ 0.91
CBX4O00257 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.76■□□□□ 0.91
CBX4O00257 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.76■□□□□ 0.91
CBX4O00257 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.76■□□□□ 0.91
CBX4O00257 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CBX4O00257 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CBX4O00257 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CBX4O00257 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CBX4O00257 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.76■□□□□ 0.91
CBX4O00257 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CBX4O00257 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
CBX4O00257 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.76■□□□□ 0.91
CBX4O00257 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CBX4O00257 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CBX4O00257 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.75■□□□□ 0.91
CBX4O00257 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.75■□□□□ 0.91
CBX4O00257 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.75■□□□□ 0.91
CBX4O00257 POU5F1P3-201ENST00000428824 1078 ntBASIC20.75■□□□□ 0.91
CBX4O00257 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
CBX4O00257 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.75■□□□□ 0.91
CBX4O00257 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.75■□□□□ 0.91
CBX4O00257 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.75■□□□□ 0.91
CBX4O00257 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.75■□□□□ 0.91
CBX4O00257 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 KRT8P36-201ENST00000489121 1440 ntBASIC20.75■□□□□ 0.91
CBX4O00257 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.75■□□□□ 0.91
CBX4O00257 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.75■□□□□ 0.91
CBX4O00257 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.75■□□□□ 0.91
CBX4O00257 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CBX4O00257 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.74■□□□□ 0.91
CBX4O00257 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CBX4O00257 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.74■□□□□ 0.91
CBX4O00257 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CBX4O00257 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CBX4O00257 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.74■□□□□ 0.91
CBX4O00257 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CBX4O00257 C2orf69P4-201ENST00000565394 541 ntBASIC20.74■□□□□ 0.91
CBX4O00257 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CBX4O00257 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CBX4O00257 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CBX4O00257 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.74■□□□□ 0.91
CBX4O00257 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.74■□□□□ 0.91
CBX4O00257 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CBX4O00257 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CBX4O00257 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CBX4O00257 AC007225.1-201ENST00000566331 1836 ntBASIC20.74■□□□□ 0.91
CBX4O00257 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CBX4O00257 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CBX4O00257 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CBX4O00257 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CBX4O00257 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CBX4O00257 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.73■□□□□ 0.91
CBX4O00257 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CBX4O00257 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.73■□□□□ 0.91
CBX4O00257 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CBX4O00257 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.73■□□□□ 0.91
CBX4O00257 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CBX4O00257 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CBX4O00257 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.73■□□□□ 0.91
CBX4O00257 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CBX4O00257 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CBX4O00257 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CBX4O00257 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms