Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 BX005040.4-201ENST00000637145 1518 ntBASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 DUX4L19-201ENST00000557448 1267 ntBASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.21■□□□□ 0.83
USH1CQ9Y6N9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
USH1CQ9Y6N9 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USH1CQ9Y6N9 AC092720.2-201ENST00000602388 1665 ntBASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
USH1CQ9Y6N9 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 AC055733.4-201ENST00000638462 1354 ntBASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
USH1CQ9Y6N9 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 AC011484.1-201ENST00000377652 1995 ntBASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 AC009237.3-201ENST00000393279 1427 ntBASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USH1CQ9Y6N9 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms