Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 AC066615.1-201ENST00000640911 628 ntBASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 MKRN4P-201ENST00000444706 1521 ntBASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 AP005212.1-201ENST00000581547 1997 ntBASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
PCDHB3Q9Y5E6 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
PCDHB3Q9Y5E6 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
PCDHB3Q9Y5E6 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
PCDHB3Q9Y5E6 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 AC006128.1-201ENST00000624704 1661 ntBASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHB3Q9Y5E6 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHB3Q9Y5E6 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.87■□□□□ 0.77
PCDHB3Q9Y5E6 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 MIR4651-201ENST00000582622 73 ntBASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 AC016405.3-201ENST00000607710 860 ntBASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHB3Q9Y5E6 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms