Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 IRS3P-201ENST00000223076 1006 ntBASIC19.24■□□□□ 0.67
VAPAQ9P0L0 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 SLC7A5P2-201ENST00000553010 536 ntBASIC19.24■□□□□ 0.67
VAPAQ9P0L0 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VAPAQ9P0L0 RNF165-205ENST00000588679 2904 ntBASIC19.23■□□□□ 0.67
VAPAQ9P0L0 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VAPAQ9P0L0 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.23■□□□□ 0.67
VAPAQ9P0L0 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VAPAQ9P0L0 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VAPAQ9P0L0 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VAPAQ9P0L0 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VAPAQ9P0L0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.23■□□□□ 0.67
VAPAQ9P0L0 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VAPAQ9P0L0 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.23■□□□□ 0.67
VAPAQ9P0L0 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 AL158211.5-201ENST00000623583 2518 ntBASIC19.22■□□□□ 0.67
VAPAQ9P0L0 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VAPAQ9P0L0 AC087289.5-201ENST00000586076 3175 ntBASIC19.22■□□□□ 0.67
VAPAQ9P0L0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 AC116562.4-201ENST00000641316 2276 ntBASIC19.21■□□□□ 0.67
VAPAQ9P0L0 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VAPAQ9P0L0 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 DUX4L2-201ENST00000561772 1275 ntBASIC19.2■□□□□ 0.66
VAPAQ9P0L0 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 AC104187.1-201ENST00000607510 612 ntBASIC19.2■□□□□ 0.66
VAPAQ9P0L0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 DUX4L6-201ENST00000626483 1275 ntBASIC19.2■□□□□ 0.66
VAPAQ9P0L0 DUX4L1-201ENST00000627662 1275 ntBASIC19.2■□□□□ 0.66
VAPAQ9P0L0 DUX4L8-201ENST00000629013 1275 ntBASIC19.2■□□□□ 0.66
VAPAQ9P0L0 DUX4L3-201ENST00000630187 1275 ntBASIC19.2■□□□□ 0.66
VAPAQ9P0L0 DUX4L7-201ENST00000630678 1275 ntBASIC19.2■□□□□ 0.66
VAPAQ9P0L0 DUX4L5-201ENST00000630834 1275 ntBASIC19.2■□□□□ 0.66
VAPAQ9P0L0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VAPAQ9P0L0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms