Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VCX3AQ9NNX9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 THA1P-201ENST00000590384 1145 ntBASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 AC099778.1-201ENST00000568593 1911 ntBASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VCX3AQ9NNX9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCX3AQ9NNX9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
VCX3AQ9NNX9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19■□□□□ 0.63
VCX3AQ9NNX9 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19■□□□□ 0.63
VCX3AQ9NNX9 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19■□□□□ 0.63
VCX3AQ9NNX9 AC007225.1-201ENST00000566331 1836 ntBASIC19■□□□□ 0.63
VCX3AQ9NNX9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19■□□□□ 0.63
VCX3AQ9NNX9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VCX3AQ9NNX9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19■□□□□ 0.63
VCX3AQ9NNX9 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19■□□□□ 0.63
VCX3AQ9NNX9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19■□□□□ 0.63
VCX3AQ9NNX9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19■□□□□ 0.63
VCX3AQ9NNX9 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19■□□□□ 0.63
VCX3AQ9NNX9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19■□□□□ 0.63
VCX3AQ9NNX9 AC005703.6-201ENST00000623265 1329 ntBASIC19■□□□□ 0.63
VCX3AQ9NNX9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.99■□□□□ 0.63
VCX3AQ9NNX9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.98■□□□□ 0.63
VCX3AQ9NNX9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 SNX5-217ENST00000606557 1087 ntBASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 AC121338.2-201ENST00000622535 1744 ntBASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.97■□□□□ 0.63
VCX3AQ9NNX9 AL512408.1-201ENST00000569378 2000 ntBASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VCX3AQ9NNX9 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms