Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.87■□□□□ 0.45
LIME1Q9H400 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
LIME1Q9H400 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 FAM210CP-201ENST00000445714 574 ntBASIC17.87■□□□□ 0.45
LIME1Q9H400 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.87■□□□□ 0.45
LIME1Q9H400 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.87■□□□□ 0.45
LIME1Q9H400 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.87■□□□□ 0.45
LIME1Q9H400 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.87■□□□□ 0.45
LIME1Q9H400 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.87■□□□□ 0.45
LIME1Q9H400 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.87■□□□□ 0.45
LIME1Q9H400 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
LIME1Q9H400 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.86■□□□□ 0.45
LIME1Q9H400 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.86■□□□□ 0.45
LIME1Q9H400 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.86■□□□□ 0.45
LIME1Q9H400 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.86■□□□□ 0.45
LIME1Q9H400 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.86■□□□□ 0.45
LIME1Q9H400 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.86■□□□□ 0.45
LIME1Q9H400 HLA-B-256ENST00000639848 1089 ntBASIC17.86■□□□□ 0.45
LIME1Q9H400 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.86■□□□□ 0.45
LIME1Q9H400 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.86■□□□□ 0.45
LIME1Q9H400 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.86■□□□□ 0.45
LIME1Q9H400 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.86■□□□□ 0.45
LIME1Q9H400 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.86■□□□□ 0.45
LIME1Q9H400 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.86■□□□□ 0.45
LIME1Q9H400 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.86■□□□□ 0.45
LIME1Q9H400 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIME1Q9H400 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.86■□□□□ 0.45
LIME1Q9H400 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIME1Q9H400 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIME1Q9H400 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
LIME1Q9H400 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.85■□□□□ 0.45
LIME1Q9H400 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIME1Q9H400 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
LIME1Q9H400 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIME1Q9H400 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
LIME1Q9H400 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIME1Q9H400 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.85■□□□□ 0.45
LIME1Q9H400 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.85■□□□□ 0.45
LIME1Q9H400 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.85■□□□□ 0.45
LIME1Q9H400 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIME1Q9H400 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIME1Q9H400 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.85■□□□□ 0.45
LIME1Q9H400 RN7SL471P-201ENST00000580476 299 ntBASIC17.85■□□□□ 0.45
LIME1Q9H400 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.85■□□□□ 0.45
LIME1Q9H400 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIME1Q9H400 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIME1Q9H400 AC010331.1-201ENST00000611423 582 ntBASIC17.85■□□□□ 0.45
LIME1Q9H400 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
LIME1Q9H400 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIME1Q9H400 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.84■□□□□ 0.45
LIME1Q9H400 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.84■□□□□ 0.45
LIME1Q9H400 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LIME1Q9H400 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LIME1Q9H400 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.84■□□□□ 0.45
LIME1Q9H400 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 KRT17P3-201ENST00000420566 1262 ntBASIC17.84■□□□□ 0.45
LIME1Q9H400 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.84■□□□□ 0.45
LIME1Q9H400 KRT18P21-201ENST00000515767 1272 ntBASIC17.84■□□□□ 0.45
LIME1Q9H400 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 PNMA6B-201ENST00000538162 1200 ntBASIC17.84■□□□□ 0.45
LIME1Q9H400 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.84■□□□□ 0.45
LIME1Q9H400 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
LIME1Q9H400 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LIME1Q9H400 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIME1Q9H400 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms