Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 AL355472.2-201ENST00000422958 438 ntBASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 NME6-213ENST00000451657 871 ntTSL 2 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 GATS-209ENST00000454084 1030 ntTSL 3 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 AC073648.6-201ENST00000641589 218 ntBASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 AP006294.2-201ENST00000641667 209 ntBASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
RPAP1Q9BWH6 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.56
RPAP1Q9BWH6 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 HLA-B-256ENST00000639848 1089 ntBASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC24.76■■□□□ 1.55
RPAP1Q9BWH6 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
RPAP1Q9BWH6 PLK5-205ENST00000642079 1969 ntBASIC24.75■■□□□ 1.55
RPAP1Q9BWH6 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
RPAP1Q9BWH6 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC24.75■■□□□ 1.55
RPAP1Q9BWH6 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC24.75■■□□□ 1.55
RPAP1Q9BWH6 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
RPAP1Q9BWH6 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
RPAP1Q9BWH6 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
RPAP1Q9BWH6 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
RPAP1Q9BWH6 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 MCRIP2P1-201ENST00000394346 511 ntBASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 AC142381.4-202ENST00000563973 229 ntBASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 EXOC3-AS1-202ENST00000623673 1663 ntBASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
RPAP1Q9BWH6 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 BAALC-201ENST00000297574 801 ntTSL 3 BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 AC008403.3-201ENST00000598924 454 ntBASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 AL589743.5-201ENST00000616611 1050 ntBASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RPAP1Q9BWH6 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC24.72■■□□□ 1.55
RPAP1Q9BWH6 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
RPAP1Q9BWH6 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RPAP1Q9BWH6 AC007322.3-201ENST00000426526 701 ntBASIC24.72■■□□□ 1.55
RPAP1Q9BWH6 AL158047.1-201ENST00000445918 881 ntBASIC24.72■■□□□ 1.55
RPAP1Q9BWH6 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
RPAP1Q9BWH6 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC24.72■■□□□ 1.55
RPAP1Q9BWH6 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
RPAP1Q9BWH6 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC24.72■■□□□ 1.55
RPAP1Q9BWH6 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC24.72■■□□□ 1.55
RPAP1Q9BWH6 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
RPAP1Q9BWH6 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC24.7■■□□□ 1.55
RPAP1Q9BWH6 AC116050.2-201ENST00000612102 1779 ntBASIC24.7■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms