Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RAB40CQ96S21 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
RAB40CQ96S21 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC16.47■□□□□ 0.23
RAB40CQ96S21 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RAB40CQ96S21 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RAB40CQ96S21 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RAB40CQ96S21 AC098818.2-201ENST00000564925 2320 ntBASIC16.46■□□□□ 0.23
RAB40CQ96S21 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RAB40CQ96S21 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RAB40CQ96S21 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RAB40CQ96S21 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RAB40CQ96S21 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RAB40CQ96S21 AL136116.3-201ENST00000402907 1138 ntBASIC16.46■□□□□ 0.23
RAB40CQ96S21 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RAB40CQ96S21 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RAB40CQ96S21 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
RAB40CQ96S21 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RAB40CQ96S21 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
RAB40CQ96S21 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.45■□□□□ 0.22
RAB40CQ96S21 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC16.45■□□□□ 0.22
RAB40CQ96S21 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
RAB40CQ96S21 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RAB40CQ96S21 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
RAB40CQ96S21 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC16.45■□□□□ 0.22
RAB40CQ96S21 AC133561.4-201ENST00000566112 224 ntBASIC16.45■□□□□ 0.22
RAB40CQ96S21 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
RAB40CQ96S21 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
RAB40CQ96S21 AC008406.3-201ENST00000620001 1374 ntBASIC16.45■□□□□ 0.22
RAB40CQ96S21 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RAB40CQ96S21 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RAB40CQ96S21 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.44■□□□□ 0.22
RAB40CQ96S21 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RAB40CQ96S21 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RAB40CQ96S21 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RAB40CQ96S21 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
RAB40CQ96S21 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RAB40CQ96S21 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.44■□□□□ 0.22
RAB40CQ96S21 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.44■□□□□ 0.22
RAB40CQ96S21 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RAB40CQ96S21 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.44■□□□□ 0.22
RAB40CQ96S21 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RAB40CQ96S21 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RAB40CQ96S21 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
RAB40CQ96S21 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RAB40CQ96S21 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms