Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SKA1Q96BD8 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SKA1Q96BD8 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SKA1Q96BD8 POU5F1P3-201ENST00000428824 1078 ntBASIC20.84■□□□□ 0.93
SKA1Q96BD8 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 MIR4651-201ENST00000582622 73 ntBASIC20.84■□□□□ 0.93
SKA1Q96BD8 AC016405.3-201ENST00000607710 860 ntBASIC20.84■□□□□ 0.93
SKA1Q96BD8 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 AC066615.1-201ENST00000640911 628 ntBASIC20.84■□□□□ 0.93
SKA1Q96BD8 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SKA1Q96BD8 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 AL049796.1-201ENST00000565336 1766 ntBASIC20.84■□□□□ 0.93
SKA1Q96BD8 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
SKA1Q96BD8 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SKA1Q96BD8 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SKA1Q96BD8 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.83■□□□□ 0.93
SKA1Q96BD8 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SKA1Q96BD8 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
SKA1Q96BD8 KRT18P29-201ENST00000397031 1267 ntBASIC20.83■□□□□ 0.93
SKA1Q96BD8 BX276092.2-201ENST00000417668 665 ntBASIC20.83■□□□□ 0.93
SKA1Q96BD8 AC097658.1-201ENST00000475555 843 ntBASIC20.83■□□□□ 0.93
SKA1Q96BD8 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.83■□□□□ 0.93
SKA1Q96BD8 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SKA1Q96BD8 AC243732.1-201ENST00000612648 864 ntBASIC20.83■□□□□ 0.93
SKA1Q96BD8 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SKA1Q96BD8 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SKA1Q96BD8 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.83■□□□□ 0.92
SKA1Q96BD8 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.83■□□□□ 0.92
SKA1Q96BD8 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
SKA1Q96BD8 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SKA1Q96BD8 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA1Q96BD8 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA1Q96BD8 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA1Q96BD8 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA1Q96BD8 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 AC098934.4-201ENST00000564127 592 ntBASIC20.82■□□□□ 0.92
SKA1Q96BD8 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA1Q96BD8 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.82■□□□□ 0.92
SKA1Q96BD8 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA1Q96BD8 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SKA1Q96BD8 GABARAPL3-202ENST00000624044 1851 ntBASIC20.81■□□□□ 0.92
SKA1Q96BD8 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SKA1Q96BD8 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SKA1Q96BD8 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SKA1Q96BD8 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SKA1Q96BD8 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SKA1Q96BD8 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.81■□□□□ 0.92
SKA1Q96BD8 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SKA1Q96BD8 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.8■□□□□ 0.92
SKA1Q96BD8 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SKA1Q96BD8 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SKA1Q96BD8 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SKA1Q96BD8 RBM17P2-201ENST00000616397 1405 ntBASIC20.8■□□□□ 0.92
SKA1Q96BD8 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SKA1Q96BD8 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.8■□□□□ 0.92
SKA1Q96BD8 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SKA1Q96BD8 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.8■□□□□ 0.92
SKA1Q96BD8 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.8■□□□□ 0.92
SKA1Q96BD8 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SKA1Q96BD8 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SKA1Q96BD8 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
SKA1Q96BD8 AC093787.1-201ENST00000450396 207 ntBASIC20.8■□□□□ 0.92
SKA1Q96BD8 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.8■□□□□ 0.92
SKA1Q96BD8 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SKA1Q96BD8 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.8■□□□□ 0.92
SKA1Q96BD8 ITM2C-210ENST00000620962 501 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms