Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.82■□□□□ 0.92
SHROOM3Q8TF72 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SHROOM3Q8TF72 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHROOM3Q8TF72 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.82■□□□□ 0.92
SHROOM3Q8TF72 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.82■□□□□ 0.92
SHROOM3Q8TF72 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHROOM3Q8TF72 KRT8P36-201ENST00000489121 1440 ntBASIC20.82■□□□□ 0.92
SHROOM3Q8TF72 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.82■□□□□ 0.92
SHROOM3Q8TF72 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SHROOM3Q8TF72 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SHROOM3Q8TF72 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 AC005181.1-201ENST00000604782 1256 ntBASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 RARRES2P4-201ENST00000514074 484 ntBASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 CYP2T3P-201ENST00000601990 817 ntBASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHROOM3Q8TF72 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 KRT17P1-201ENST00000399211 1546 ntBASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 AL391422.3-201ENST00000603791 2761 ntBASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 GUSBP6-202ENST00000438529 1198 ntBASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 AC008687.6-201ENST00000596318 630 ntBASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 OR10C1-204ENST00000622521 1039 ntBASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHROOM3Q8TF72 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 AC133552.2-202ENST00000575694 574 ntBASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHROOM3Q8TF72 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHROOM3Q8TF72 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 DUSP5P2-201ENST00000426873 1033 ntBASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 CYP21A1P-202ENST00000354927 1481 ntBASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms