Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 RER1-204ENST00000378518 522 ntTSL 3 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 AL049637.2-201ENST00000641778 930 ntBASIC27■■□□□ 1.91
USHBP1Q8N6Y0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC27■■□□□ 1.91
USHBP1Q8N6Y0 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 HES2-206ENST00000489730 730 ntTSL 2 BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 AC110285.5-201ENST00000611501 352 ntBASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 AC124283.5-201ENST00000624661 1809 ntBASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 TUB-203ENST00000534099 1759 ntTSL 2 BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC26.99■■□□□ 1.91
USHBP1Q8N6Y0 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 AL390719.1-204ENST00000412397 1219 ntBASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 BX088651.1-201ENST00000540551 451 ntBASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC26.98■■□□□ 1.91
USHBP1Q8N6Y0 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 AC113410.3-201ENST00000623366 203 ntBASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
USHBP1Q8N6Y0 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC26.96■■□□□ 1.91
USHBP1Q8N6Y0 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC26.96■■□□□ 1.91
USHBP1Q8N6Y0 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
USHBP1Q8N6Y0 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC26.96■■□□□ 1.91
USHBP1Q8N6Y0 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC26.96■■□□□ 1.91
USHBP1Q8N6Y0 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC26.96■■□□□ 1.91
USHBP1Q8N6Y0 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
USHBP1Q8N6Y0 RPS20-210ENST00000523936 899 ntTSL 2 BASIC26.96■■□□□ 1.91
USHBP1Q8N6Y0 AC011484.1-201ENST00000377652 1995 ntBASIC26.96■■□□□ 1.91
USHBP1Q8N6Y0 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
USHBP1Q8N6Y0 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC26.95■■□□□ 1.91
USHBP1Q8N6Y0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC26.95■■□□□ 1.91
USHBP1Q8N6Y0 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC26.95■■□□□ 1.91
USHBP1Q8N6Y0 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC26.95■■□□□ 1.91
USHBP1Q8N6Y0 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
USHBP1Q8N6Y0 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC26.95■■□□□ 1.9
USHBP1Q8N6Y0 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC26.95■■□□□ 1.9
USHBP1Q8N6Y0 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
USHBP1Q8N6Y0 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
USHBP1Q8N6Y0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC26.95■■□□□ 1.9
USHBP1Q8N6Y0 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.9
USHBP1Q8N6Y0 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 FBXW4P1-201ENST00000426721 2239 ntBASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USHBP1Q8N6Y0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms