Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
HADHAP40939 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
HADHAP40939 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
HADHAP40939 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HADHAP40939 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
HADHAP40939 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
HADHAP40939 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.58■□□□□ 0.88
HADHAP40939 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
HADHAP40939 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
HADHAP40939 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HADHAP40939 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HADHAP40939 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.57■□□□□ 0.88
HADHAP40939 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HADHAP40939 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HADHAP40939 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HADHAP40939 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HADHAP40939 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.57■□□□□ 0.88
HADHAP40939 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HADHAP40939 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
HADHAP40939 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HADHAP40939 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HADHAP40939 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.57■□□□□ 0.88
HADHAP40939 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HADHAP40939 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HADHAP40939 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HADHAP40939 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HADHAP40939 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HADHAP40939 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HADHAP40939 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
HADHAP40939 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HADHAP40939 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HADHAP40939 DUX4L16-201ENST00000555130 1264 ntBASIC20.56■□□□□ 0.88
HADHAP40939 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.56■□□□□ 0.88
HADHAP40939 AL137784.2-201ENST00000607332 1000 ntBASIC20.56■□□□□ 0.88
HADHAP40939 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.56■□□□□ 0.88
HADHAP40939 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
HADHAP40939 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HADHAP40939 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HADHAP40939 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.56■□□□□ 0.88
HADHAP40939 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.56■□□□□ 0.88
HADHAP40939 FP700111.2-201ENST00000619190 1892 ntBASIC20.56■□□□□ 0.88
HADHAP40939 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HADHAP40939 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.55■□□□□ 0.88
HADHAP40939 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.55■□□□□ 0.88
HADHAP40939 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.55■□□□□ 0.88
HADHAP40939 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HADHAP40939 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.55■□□□□ 0.88
HADHAP40939 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.55■□□□□ 0.88
HADHAP40939 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
HADHAP40939 AC231657.2-201ENST00000624556 255 ntBASIC20.55■□□□□ 0.88
HADHAP40939 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.55■□□□□ 0.88
HADHAP40939 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HADHAP40939 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HADHAP40939 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.54■□□□□ 0.88
HADHAP40939 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HADHAP40939 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HADHAP40939 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.54■□□□□ 0.88
HADHAP40939 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
HADHAP40939 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.54■□□□□ 0.88
HADHAP40939 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HADHAP40939 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
HADHAP40939 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.54■□□□□ 0.88
HADHAP40939 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.54■□□□□ 0.88
HADHAP40939 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.54■□□□□ 0.88
HADHAP40939 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
HADHAP40939 FAM21FP-204ENST00000608637 956 ntBASIC20.54■□□□□ 0.88
HADHAP40939 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HADHAP40939 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.54■□□□□ 0.88
HADHAP40939 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HADHAP40939 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HADHAP40939 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HADHAP40939 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HADHAP40939 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HADHAP40939 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HADHAP40939 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HADHAP40939 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HADHAP40939 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HADHAP40939 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.54■□□□□ 0.88
HADHAP40939 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.54■□□□□ 0.88
HADHAP40939 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.53■□□□□ 0.88
HADHAP40939 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
HADHAP40939 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms