Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
TPM1P09493 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC22.38■■□□□ 1.17
TPM1P09493 AC061975.6-201ENST00000579045 1553 ntBASIC22.38■■□□□ 1.17
TPM1P09493 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TPM1P09493 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.38■■□□□ 1.17
TPM1P09493 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
TPM1P09493 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
TPM1P09493 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
TPM1P09493 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TPM1P09493 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC22.37■■□□□ 1.17
TPM1P09493 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
TPM1P09493 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
TPM1P09493 AC099791.1-201ENST00000416440 715 ntBASIC22.37■■□□□ 1.17
TPM1P09493 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.37■■□□□ 1.17
TPM1P09493 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
TPM1P09493 AC027682.1-201ENST00000562846 899 ntBASIC22.37■■□□□ 1.17
TPM1P09493 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
TPM1P09493 BX323043.1-201ENST00000641006 1765 ntBASIC22.37■■□□□ 1.17
TPM1P09493 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.37■■□□□ 1.17
TPM1P09493 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TPM1P09493 MFF-207ENST00000409565 1548 ntTSL 2 BASIC22.36■■□□□ 1.17
TPM1P09493 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
TPM1P09493 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.36■■□□□ 1.17
TPM1P09493 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.36■■□□□ 1.17
TPM1P09493 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.36■■□□□ 1.17
TPM1P09493 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 AC008175.2-201ENST00000612840 297 ntBASIC22.36■■□□□ 1.17
TPM1P09493 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
TPM1P09493 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC22.36■■□□□ 1.17
TPM1P09493 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC22.36■■□□□ 1.17
TPM1P09493 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC22.36■■□□□ 1.17
TPM1P09493 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC22.36■■□□□ 1.17
TPM1P09493 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TPM1P09493 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
TPM1P09493 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC22.35■■□□□ 1.17
TPM1P09493 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.35■■□□□ 1.17
TPM1P09493 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.35■■□□□ 1.17
TPM1P09493 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.35■■□□□ 1.17
TPM1P09493 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TPM1P09493 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.35■■□□□ 1.17
TPM1P09493 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC22.35■■□□□ 1.17
TPM1P09493 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TPM1P09493 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TPM1P09493 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC22.34■■□□□ 1.17
TPM1P09493 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TPM1P09493 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TPM1P09493 SMG8-203ENST00000578922 2178 ntBASIC22.34■■□□□ 1.17
TPM1P09493 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
TPM1P09493 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TPM1P09493 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
TPM1P09493 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.34■■□□□ 1.17
TPM1P09493 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
TPM1P09493 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC22.34■■□□□ 1.17
TPM1P09493 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.34■■□□□ 1.17
TPM1P09493 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
TPM1P09493 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
TPM1P09493 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
TPM1P09493 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC22.34■■□□□ 1.17
TPM1P09493 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TPM1P09493 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TPM1P09493 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TPM1P09493 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC22.33■■□□□ 1.17
TPM1P09493 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TPM1P09493 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TPM1P09493 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
TPM1P09493 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.33■■□□□ 1.17
TPM1P09493 POU5F1P4-201ENST00000413175 1085 ntBASIC22.33■■□□□ 1.17
TPM1P09493 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.33■■□□□ 1.17
TPM1P09493 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TPM1P09493 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC22.33■■□□□ 1.17
TPM1P09493 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TPM1P09493 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TPM1P09493 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.33■■□□□ 1.16
TPM1P09493 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
TPM1P09493 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
TPM1P09493 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
TPM1P09493 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
TPM1P09493 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
TPM1P09493 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.33■■□□□ 1.16
TPM1P09493 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms