Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFBP01127 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.66■□□□□ 0.9
PDGFBP01127 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFBP01127 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.66■□□□□ 0.9
PDGFBP01127 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PDGFBP01127 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.66■□□□□ 0.9
PDGFBP01127 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFBP01127 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
PDGFBP01127 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFBP01127 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFBP01127 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFBP01127 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFBP01127 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PDGFBP01127 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
PDGFBP01127 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.65■□□□□ 0.9
PDGFBP01127 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.65■□□□□ 0.9
PDGFBP01127 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDGFBP01127 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PDGFBP01127 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.64■□□□□ 0.9
PDGFBP01127 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PDGFBP01127 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PDGFBP01127 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDGFBP01127 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDGFBP01127 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PDGFBP01127 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.64■□□□□ 0.89
PDGFBP01127 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.64■□□□□ 0.89
PDGFBP01127 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.64■□□□□ 0.89
PDGFBP01127 AP002982.1-201ENST00000492365 877 ntBASIC20.64■□□□□ 0.89
PDGFBP01127 KRT18P56-201ENST00000507275 550 ntBASIC20.64■□□□□ 0.89
PDGFBP01127 KRT126P-201ENST00000549467 1181 ntBASIC20.64■□□□□ 0.89
PDGFBP01127 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.64■□□□□ 0.89
PDGFBP01127 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
PDGFBP01127 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.64■□□□□ 0.89
PDGFBP01127 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.64■□□□□ 0.89
PDGFBP01127 AL356652.1-201ENST00000615962 565 ntBASIC20.64■□□□□ 0.89
PDGFBP01127 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.64■□□□□ 0.89
PDGFBP01127 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDGFBP01127 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.64■□□□□ 0.89
PDGFBP01127 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.63■□□□□ 0.89
PDGFBP01127 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDGFBP01127 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDGFBP01127 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.63■□□□□ 0.89
PDGFBP01127 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDGFBP01127 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDGFBP01127 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDGFBP01127 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.63■□□□□ 0.89
PDGFBP01127 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.63■□□□□ 0.89
PDGFBP01127 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.63■□□□□ 0.89
PDGFBP01127 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.63■□□□□ 0.89
PDGFBP01127 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.63■□□□□ 0.89
PDGFBP01127 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
PDGFBP01127 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.63■□□□□ 0.89
PDGFBP01127 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.63■□□□□ 0.89
PDGFBP01127 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDGFBP01127 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.63■□□□□ 0.89
PDGFBP01127 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PDGFBP01127 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.62■□□□□ 0.89
PDGFBP01127 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDGFBP01127 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDGFBP01127 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDGFBP01127 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
PDGFBP01127 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDGFBP01127 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
PDGFBP01127 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.62■□□□□ 0.89
PDGFBP01127 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PDGFBP01127 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDGFBP01127 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDGFBP01127 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PDGFBP01127 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.62■□□□□ 0.89
PDGFBP01127 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.61■□□□□ 0.89
PDGFBP01127 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.61■□□□□ 0.89
PDGFBP01127 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 CRYGFP-201ENST00000418459 633 ntBASIC20.61■□□□□ 0.89
PDGFBP01127 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.61■□□□□ 0.89
PDGFBP01127 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.61■□□□□ 0.89
PDGFBP01127 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.61■□□□□ 0.89
PDGFBP01127 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
PDGFBP01127 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.61■□□□□ 0.89
PDGFBP01127 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
PDGFBP01127 CR392000.1-201ENST00000624770 1228 ntBASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms