Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CPSF4O95639 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.36■□□□□ 0.69
CPSF4O95639 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.36■□□□□ 0.69
CPSF4O95639 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.36■□□□□ 0.69
CPSF4O95639 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.36■□□□□ 0.69
CPSF4O95639 AC116050.2-201ENST00000612102 1779 ntBASIC19.36■□□□□ 0.69
CPSF4O95639 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CPSF4O95639 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CPSF4O95639 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CPSF4O95639 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
CPSF4O95639 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.36■□□□□ 0.69
CPSF4O95639 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.36■□□□□ 0.69
CPSF4O95639 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CPSF4O95639 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CPSF4O95639 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.35■□□□□ 0.69
CPSF4O95639 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.35■□□□□ 0.69
CPSF4O95639 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CPSF4O95639 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.35■□□□□ 0.69
CPSF4O95639 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CPSF4O95639 TERF1P2-201ENST00000583350 1212 ntBASIC19.35■□□□□ 0.69
CPSF4O95639 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CPSF4O95639 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CPSF4O95639 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CPSF4O95639 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CPSF4O95639 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CPSF4O95639 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.34■□□□□ 0.69
CPSF4O95639 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CPSF4O95639 AC099778.1-201ENST00000568593 1911 ntBASIC19.34■□□□□ 0.69
CPSF4O95639 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.34■□□□□ 0.69
CPSF4O95639 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.34■□□□□ 0.69
CPSF4O95639 AC123595.1-201ENST00000440769 1046 ntBASIC19.34■□□□□ 0.69
CPSF4O95639 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.34■□□□□ 0.69
CPSF4O95639 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.34■□□□□ 0.69
CPSF4O95639 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.34■□□□□ 0.69
CPSF4O95639 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.34■□□□□ 0.69
CPSF4O95639 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CPSF4O95639 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CPSF4O95639 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.34■□□□□ 0.69
CPSF4O95639 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
CPSF4O95639 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CPSF4O95639 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CPSF4O95639 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.34■□□□□ 0.69
CPSF4O95639 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.34■□□□□ 0.69
CPSF4O95639 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CPSF4O95639 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CPSF4O95639 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.34■□□□□ 0.69
CPSF4O95639 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CPSF4O95639 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CPSF4O95639 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CPSF4O95639 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
CPSF4O95639 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CPSF4O95639 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.69
CPSF4O95639 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.33■□□□□ 0.68
CPSF4O95639 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CPSF4O95639 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.33■□□□□ 0.68
CPSF4O95639 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.33■□□□□ 0.68
CPSF4O95639 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CPSF4O95639 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.33■□□□□ 0.68
CPSF4O95639 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.33■□□□□ 0.68
CPSF4O95639 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.33■□□□□ 0.68
CPSF4O95639 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.33■□□□□ 0.68
CPSF4O95639 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CPSF4O95639 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.33■□□□□ 0.68
CPSF4O95639 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CPSF4O95639 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CPSF4O95639 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.32■□□□□ 0.68
CPSF4O95639 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.32■□□□□ 0.68
CPSF4O95639 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.32■□□□□ 0.68
CPSF4O95639 YBX1P1-201ENST00000445822 960 ntBASIC19.32■□□□□ 0.68
CPSF4O95639 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.32■□□□□ 0.68
CPSF4O95639 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.32■□□□□ 0.68
CPSF4O95639 MIR2861-201ENST00000636310 90 ntBASIC19.32■□□□□ 0.68
CPSF4O95639 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CPSF4O95639 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
CPSF4O95639 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4O95639 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CPSF4O95639 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CPSF4O95639 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4O95639 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4O95639 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4O95639 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.31■□□□□ 0.68
CPSF4O95639 KRT18P14-201ENST00000534205 1250 ntBASIC19.31■□□□□ 0.68
CPSF4O95639 CCDC92B-201ENST00000575506 885 ntBASIC19.31■□□□□ 0.68
CPSF4O95639 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4O95639 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.31■□□□□ 0.68
CPSF4O95639 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms