Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTN3O95197 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTN3O95197 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTN3O95197 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.46■■□□□ 1.03
RTN3O95197 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
RTN3O95197 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTN3O95197 MIR4651-201ENST00000582622 73 ntBASIC21.46■■□□□ 1.03
RTN3O95197 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.46■■□□□ 1.03
RTN3O95197 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.46■■□□□ 1.03
RTN3O95197 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTN3O95197 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RTN3O95197 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTN3O95197 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTN3O95197 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
RTN3O95197 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.45■■□□□ 1.03
RTN3O95197 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTN3O95197 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.45■■□□□ 1.02
RTN3O95197 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTN3O95197 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTN3O95197 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTN3O95197 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTN3O95197 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
RTN3O95197 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTN3O95197 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
RTN3O95197 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTN3O95197 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTN3O95197 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTN3O95197 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.45■■□□□ 1.02
RTN3O95197 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.45■■□□□ 1.02
RTN3O95197 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.45■■□□□ 1.02
RTN3O95197 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTN3O95197 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.45■■□□□ 1.02
RTN3O95197 HLA-B-256ENST00000639848 1089 ntBASIC21.45■■□□□ 1.02
RTN3O95197 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.45■■□□□ 1.02
RTN3O95197 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.45■■□□□ 1.02
RTN3O95197 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.44■■□□□ 1.02
RTN3O95197 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTN3O95197 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.44■■□□□ 1.02
RTN3O95197 AC027702.1-201ENST00000563810 1770 ntBASIC21.44■■□□□ 1.02
RTN3O95197 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
RTN3O95197 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTN3O95197 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTN3O95197 FAM201B-201ENST00000458407 597 ntBASIC21.44■■□□□ 1.02
RTN3O95197 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTN3O95197 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTN3O95197 AF106564.1-201ENST00000607058 2553 ntBASIC21.44■■□□□ 1.02
RTN3O95197 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTN3O95197 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.44■■□□□ 1.02
RTN3O95197 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTN3O95197 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTN3O95197 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTN3O95197 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.43■■□□□ 1.02
RTN3O95197 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.43■■□□□ 1.02
RTN3O95197 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
RTN3O95197 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.43■■□□□ 1.02
RTN3O95197 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
RTN3O95197 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.43■■□□□ 1.02
RTN3O95197 C2orf69P4-201ENST00000565394 541 ntBASIC21.43■■□□□ 1.02
RTN3O95197 AC060766.5-201ENST00000590539 871 ntBASIC21.43■■□□□ 1.02
RTN3O95197 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
RTN3O95197 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.43■■□□□ 1.02
RTN3O95197 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
RTN3O95197 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.43■■□□□ 1.02
RTN3O95197 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTN3O95197 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
RTN3O95197 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RTN3O95197 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RTN3O95197 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RTN3O95197 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RTN3O95197 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.42■■□□□ 1.02
RTN3O95197 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
RTN3O95197 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RTN3O95197 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.42■■□□□ 1.02
RTN3O95197 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RTN3O95197 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.42■■□□□ 1.02
RTN3O95197 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RTN3O95197 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RTN3O95197 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.41■■□□□ 1.02
RTN3O95197 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
RTN3O95197 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RTN3O95197 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.41■■□□□ 1.02
RTN3O95197 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms