Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.49■□□□□ 0.71
SEMA3DO95025 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SEMA3DO95025 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.49■□□□□ 0.71
SEMA3DO95025 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SEMA3DO95025 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SEMA3DO95025 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.48■□□□□ 0.71
SEMA3DO95025 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.48■□□□□ 0.71
SEMA3DO95025 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SEMA3DO95025 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SEMA3DO95025 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.48■□□□□ 0.71
SEMA3DO95025 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SEMA3DO95025 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.48■□□□□ 0.71
SEMA3DO95025 DUX4L16-201ENST00000555130 1264 ntBASIC19.48■□□□□ 0.71
SEMA3DO95025 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.48■□□□□ 0.71
SEMA3DO95025 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.48■□□□□ 0.71
SEMA3DO95025 AC011767.1-201ENST00000617410 1153 ntBASIC19.48■□□□□ 0.71
SEMA3DO95025 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SEMA3DO95025 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SEMA3DO95025 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.48■□□□□ 0.71
SEMA3DO95025 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
SEMA3DO95025 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SEMA3DO95025 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.48■□□□□ 0.71
SEMA3DO95025 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
SEMA3DO95025 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SEMA3DO95025 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.48■□□□□ 0.71
SEMA3DO95025 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.47■□□□□ 0.71
SEMA3DO95025 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.47■□□□□ 0.71
SEMA3DO95025 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 CNN2P6-201ENST00000439038 900 ntBASIC19.47■□□□□ 0.71
SEMA3DO95025 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.47■□□□□ 0.71
SEMA3DO95025 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SEMA3DO95025 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
SEMA3DO95025 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.47■□□□□ 0.71
SEMA3DO95025 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SEMA3DO95025 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SEMA3DO95025 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.47■□□□□ 0.71
SEMA3DO95025 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
SEMA3DO95025 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.46■□□□□ 0.71
SEMA3DO95025 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SEMA3DO95025 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.46■□□□□ 0.71
SEMA3DO95025 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SEMA3DO95025 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.46■□□□□ 0.71
SEMA3DO95025 PGM5P4-201ENST00000421970 445 ntBASIC19.46■□□□□ 0.71
SEMA3DO95025 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.46■□□□□ 0.71
SEMA3DO95025 AC022517.1-201ENST00000592429 346 ntBASIC19.46■□□□□ 0.71
SEMA3DO95025 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SEMA3DO95025 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SEMA3DO95025 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.46■□□□□ 0.71
SEMA3DO95025 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SEMA3DO95025 AC092720.2-201ENST00000602388 1665 ntBASIC19.46■□□□□ 0.71
SEMA3DO95025 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SEMA3DO95025 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SEMA3DO95025 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
SEMA3DO95025 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SEMA3DO95025 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SEMA3DO95025 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SEMA3DO95025 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SEMA3DO95025 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
SEMA3DO95025 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.45■□□□□ 0.7
SEMA3DO95025 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SEMA3DO95025 KRT8P36-201ENST00000489121 1440 ntBASIC19.45■□□□□ 0.7
SEMA3DO95025 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.45■□□□□ 0.7
SEMA3DO95025 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SEMA3DO95025 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SEMA3DO95025 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.45■□□□□ 0.7
SEMA3DO95025 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.45■□□□□ 0.7
SEMA3DO95025 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.45■□□□□ 0.7
SEMA3DO95025 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SEMA3DO95025 AL391422.3-201ENST00000603791 2761 ntBASIC19.45■□□□□ 0.7
SEMA3DO95025 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SEMA3DO95025 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SEMA3DO95025 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SEMA3DO95025 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SEMA3DO95025 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SEMA3DO95025 AC087633.2-202ENST00000565166 1439 ntBASIC19.44■□□□□ 0.7
SEMA3DO95025 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SEMA3DO95025 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SEMA3DO95025 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SEMA3DO95025 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.44■□□□□ 0.7
SEMA3DO95025 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.44■□□□□ 0.7
SEMA3DO95025 AC016405.3-201ENST00000607710 860 ntBASIC19.44■□□□□ 0.7
SEMA3DO95025 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.44■□□□□ 0.7
SEMA3DO95025 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.44■□□□□ 0.7
SEMA3DO95025 AC231657.2-201ENST00000624556 255 ntBASIC19.44■□□□□ 0.7
SEMA3DO95025 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.44■□□□□ 0.7
SEMA3DO95025 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SEMA3DO95025 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms