Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
ZIC3O60481 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.37■□□□□ 0.53
ZIC3O60481 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.37■□□□□ 0.53
ZIC3O60481 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.37■□□□□ 0.53
ZIC3O60481 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.37■□□□□ 0.53
ZIC3O60481 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.37■□□□□ 0.53
ZIC3O60481 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.37■□□□□ 0.53
ZIC3O60481 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.37■□□□□ 0.53
ZIC3O60481 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.37■□□□□ 0.53
ZIC3O60481 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZIC3O60481 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZIC3O60481 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZIC3O60481 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.37■□□□□ 0.53
ZIC3O60481 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZIC3O60481 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZIC3O60481 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.36■□□□□ 0.53
ZIC3O60481 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZIC3O60481 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZIC3O60481 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
ZIC3O60481 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZIC3O60481 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZIC3O60481 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZIC3O60481 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.36■□□□□ 0.53
ZIC3O60481 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.36■□□□□ 0.53
ZIC3O60481 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.36■□□□□ 0.53
ZIC3O60481 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ZIC3O60481 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.36■□□□□ 0.53
ZIC3O60481 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZIC3O60481 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.36■□□□□ 0.53
ZIC3O60481 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZIC3O60481 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZIC3O60481 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.36■□□□□ 0.53
ZIC3O60481 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.36■□□□□ 0.53
ZIC3O60481 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
ZIC3O60481 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.35■□□□□ 0.53
ZIC3O60481 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.35■□□□□ 0.53
ZIC3O60481 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.35■□□□□ 0.53
ZIC3O60481 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ZIC3O60481 RNA5SP413-201ENST00000516373 109 ntBASIC18.35■□□□□ 0.53
ZIC3O60481 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.35■□□□□ 0.53
ZIC3O60481 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.35■□□□□ 0.53
ZIC3O60481 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.35■□□□□ 0.53
ZIC3O60481 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.35■□□□□ 0.53
ZIC3O60481 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZIC3O60481 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.35■□□□□ 0.53
ZIC3O60481 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
ZIC3O60481 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZIC3O60481 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.34■□□□□ 0.53
ZIC3O60481 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
ZIC3O60481 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
ZIC3O60481 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
ZIC3O60481 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.34■□□□□ 0.53
ZIC3O60481 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ZIC3O60481 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.34■□□□□ 0.53
ZIC3O60481 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.34■□□□□ 0.53
ZIC3O60481 HLA-B-256ENST00000639848 1089 ntBASIC18.34■□□□□ 0.53
ZIC3O60481 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZIC3O60481 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZIC3O60481 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.34■□□□□ 0.53
ZIC3O60481 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
ZIC3O60481 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZIC3O60481 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZIC3O60481 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ZIC3O60481 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ZIC3O60481 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
ZIC3O60481 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ZIC3O60481 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZIC3O60481 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZIC3O60481 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZIC3O60481 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ZIC3O60481 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
ZIC3O60481 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.33■□□□□ 0.52
ZIC3O60481 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.33■□□□□ 0.52
ZIC3O60481 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZIC3O60481 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZIC3O60481 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ZIC3O60481 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
ZIC3O60481 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZIC3O60481 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.32■□□□□ 0.52
ZIC3O60481 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.32■□□□□ 0.52
ZIC3O60481 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
ZIC3O60481 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZIC3O60481 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZIC3O60481 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZIC3O60481 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.32■□□□□ 0.52
ZIC3O60481 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.32■□□□□ 0.52
ZIC3O60481 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
ZIC3O60481 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZIC3O60481 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms